Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M16
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    49   5e-07
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    37   0.002
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.3  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    26   2.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   5.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.7  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   6.7  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   8.9  

>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
 Frame = -3

Query: 489 FCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNK 310
           +C   G+S+GM++F+   L   +K++  V  ++  R+ + P+I   Y  G    +     
Sbjct: 30  YCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKVICTRKM 89

Query: 309 THEEIVKWVELFRTQQGNNWNSRLRKYQY-TNHPSVQGPWTPFA 181
           +   I +   L R   G     RL KY   + +PSV+G W+PF+
Sbjct: 90  SASSIFQKAILCRDSDG--LKPRLIKYPVESTNPSVRGIWSPFS 131


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 134 NLTSGSSAVFNSGSLNANGVQGPWTEGWFVYWYLRSLEFQLLPC*VR 274
           ++T   S  +      A G+  PWT+ W   W+L SL++    C ++
Sbjct: 425 SITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQYYAYECVIK 471


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 350 YSPTMTGPRCLRGFKYTTTPGLSFEKSTKSCSMKSLIPRLAPLDLQNFIGRPNSF 514
           Y+ T+T       F  T T   +F  S    S  S+IP  AP  + +F    +S+
Sbjct: 427 YTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPSSVSSFTSSNSSY 481



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 338 SPFKYSPTMTGPRCLRGFKYTTTPGLSFEKSTKSCSMKSLIPRLAPLDLQNFIGRPNSF 514
           S   Y+ T+T       +  T T   +F  S    S  S+IP   P  + +F    +S+
Sbjct: 315 SSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSY 373


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 262 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFSDYD 366
           +L  ++ +  YD+  GFV    P+  P ++F D D
Sbjct: 55  VLDDDRANASYDISSGFVHIKFPKETPGEVFPDLD 89


>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 280 IVPNSTRQQLELETPQVPVHEPP 212
           IVP+ T  QL L +  +P+ +PP
Sbjct: 27  IVPSETMDQLPLVSATIPIMKPP 49


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 285 VELFRTQQGNNWNSRLRKYQYTNHPSVQGPWTPFAFKDPELNTAELPD--VRFGSNN 121
           V+LF+     +    LRKY   N  +V    T +AF D  L    LPD  V+  SN+
Sbjct: 232 VDLFQNSHFESLLVMLRKYDSPNKNAVLILPTLYAFIDKVLEVEYLPDQKVQLRSNS 288


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 246 SRLRKYQYTNHPSVQGPWTPFAFKDPELNTAELP 145
           SRL+K ++ N P+ +G +T +   +    + E P
Sbjct: 744 SRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDP 777


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 319 PQQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVRVQGPRIEH 158
           PQQ+P+  R M  +  N   QQL L     P    PL  +     + Q  + +H
Sbjct: 130 PQQHPQLQRMMPILSSNQPIQQLPLPNQASPYIPVPLQQQQQSQPQQQPQQQQH 183


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 211 GVVRVLVLAESRVPVVALLSSEQFDP 288
           GV  ++ L  S+VP+  ++SS+  DP
Sbjct: 37  GVTLLIFLVMSQVPLYGIVSSDSSDP 62


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 295 RKMGRIVPNSTRQQLELETPQVPVHEP--PLGPRTLDSVRVQGPRIEHGR 152
           +++   +  + +Q+ E E  ++ +  P   +GP T DS+R  G +  HG+
Sbjct: 63  QRVSETLDEALKQEDETERQKILMETPIFTVGPATDDSIRRLGFQQTHGK 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,488
Number of Sequences: 5004
Number of extensions: 48816
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)