Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M16
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical pr...    99   2e-21
AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical...    34   0.052
U61953-1|AAC48075.2|  569|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z36753-4|CAA85333.1|  163|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    28   4.6  
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    28   4.6  
U88182-5|AAB42306.1|  237|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical
           protein C25A1.13 protein.
          Length = 189

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 50/135 (37%), Positives = 76/135 (56%)
 Frame = -3

Query: 495 MKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVH 316
           ++FCK + +S G+R+FIE  LV+  + NP VV+Y +P R+  P I  EY NG  L ++  
Sbjct: 50  VRFCKQSESSVGVRNFIENQLVEIGRKNPSVVIYAQPVRNSNPSIRAEYGNGRTLQINAK 109

Query: 315 NKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSVQGPWTPFAFKDPELNTAELPDVR 136
           N T +E+ K V L  ++ G     +L   Q    PS+QG WTP  +   E+NT +LP  +
Sbjct: 110 NMTQDEVSKDVHLLFSRSGEP-VVKLESRQSALVPSIQGQWTPITWLPTEMNTEQLPAKQ 168

Query: 135 FGSNNRLPATATEQL 91
           F  +     +ATE +
Sbjct: 169 FSKHKSTATSATEYI 183


>AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical
           protein Y63D3A.7 protein.
          Length = 92

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = -3

Query: 486 CKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNKT 307
           C+ + AS G+R FIE D V   K NP   + ++      P +   Y +G     ++ + +
Sbjct: 18  CQKSPASAGVRAFIENDYVGIKKANPQFPILIREASGIVPRVFARYEHGVERVATLEDLS 77

Query: 306 HEEIVKWVELFRTQQ 262
            E +   +    +Q+
Sbjct: 78  RENVKSTITQLASQK 92


>U61953-1|AAC48075.2|  569|Caenorhabditis elegans Hypothetical
           protein R08C7.6 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -3

Query: 507 FGRPMKFCKSNGASR--GMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDR 334
           F + MK+C+ +G ++  G  D  E + +D    +  V  ++  RR   P   G Y + D 
Sbjct: 427 FDKAMKYCQDDGGAQLGGFNDKAEFEAID-KLISKKVHHWIGNRRR--PDCPGFYFHSDP 483

Query: 333 LWMSVHNKTHE 301
                HNK HE
Sbjct: 484 NHQCGHNKIHE 494


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 330 WMSVHNKTHEEIVKWVELFRTQQ 262
           W+ V++K  EEIV W++ +R ++
Sbjct: 284 WLDVYSKDLEEIVNWIKEYREKK 306


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical
           protein F18C12.1 protein.
          Length = 4171

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
 Frame = -3

Query: 345 NGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNS---RLR---KYQYTNHPSVQGPWTPF 184
           N +R   +VH +  E + K ++L   +Q N W     ++R   K +   H +V+    P+
Sbjct: 647 NRNRRLRNVHMELIEMVEKLMDLNIVKQNNEWKEIILKIRSKMKEEEIVHGAVKNNMKPW 706

Query: 183 AFK-DPELNTAELPDVRFGSNNRLPATATEQLRLMFEKQKLDELKTAE*MRDE 28
               D +L  A L    +G  +     +T  + L+F  QK+    T E +R +
Sbjct: 707 LIHWDFQLYKALLIQYEWGIESIQSQLSTISVSLVFADQKIQLRPTIEEIRSK 759


>Z36753-4|CAA85333.1|  163|Caenorhabditis elegans Hypothetical
           protein T09A5.5 protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 468 SRGMRDFIEQDLVDFSKDNPGVVVYL-KPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIV 292
           + G+  F+E+ L    ++NP V  +L +      P +VGEY         V+ K+ E+++
Sbjct: 32  AEGLEQFVEECLPAIRENNPQVKYFLQRSYTTCDPFVVGEYSWLRHRKKRVNWKSKEQVL 91

Query: 291 KWVE 280
             +E
Sbjct: 92  SMIE 95


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -3

Query: 417 DNPGVVVYLKP------RRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGN 256
           DNP +  Y++P      R H G  I   +L+   L    HN   E + K++  +  ++  
Sbjct: 307 DNPPIDHYMRPFQNALERPHHGEFITRNHLSPGNLTREHHNTLLEYLSKFMNAYPNEKKF 366

Query: 255 NW 250
           +W
Sbjct: 367 SW 368


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 289 MGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVRVQGPRIEHGRATRREI 134
           +G  +P+  R+ L LETP    HE  L   T+ +V  Q   +    +T  E+
Sbjct: 57  VGTCMPDIFRKPLILETPTAITHELTLQWTTVSNVEEQKVMVTDENSTMSEV 108


>U88182-5|AAB42306.1|  237|Caenorhabditis elegans Hypothetical
           protein C53C11.1 protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 399 VYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELF 274
           VYL P + R P   G Y   D   ++  + T E++++WV  F
Sbjct: 129 VYLTPEQRRIP---GRYFTPDDGSLAWRSWTQEQVLEWVSKF 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,810
Number of Sequences: 27780
Number of extensions: 273610
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)