Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M15
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    30   0.27 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.3  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    26   5.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.7  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -3

Query: 644 NHLFQLRCQHNTLVECQNINNNVNSTTGSKKSHSPEKNRRNKLSGYTIQA 495
           N   Q+ CQ +++ +  +  +++NST  S   H  + N  N++   ++ A
Sbjct: 68  NDACQIACQESSVPDLSSSCDSINSTVESDAGHVVDSNSFNRIDNVSVNA 117


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 22  LPLIILMLHFKPRIKSGYLGCFNSIXAQDKEMCTKYETFCEILIEK 159
           LP I   +H K  ++        S  + D+++CT YE+  +I +E+
Sbjct: 321 LPTIYSAIHTKDYVRPSQNDISVSQISVDEKICTSYESLPKIQLEQ 366


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 622 VSITHLLNVKI*IIMLTLPPVPKRATVLR--RTGETNS 515
           VS+T +++V    +  TLPP P  A  LR  R G T+S
Sbjct: 357 VSLTDIISVLYAHMKGTLPPAPHSAPSLRHGRRGSTSS 394


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 213 IFKTQSKLSIRVEKISLKLE-NLSKAIRVVKQQKICI*CFMTS*SVTRACERDREISIRH 389
           I K    + I +E+I L+ E NLS    + K   + +  +    + T A   +  +S   
Sbjct: 148 IAKLTDNIQIYIERIHLRFEDNLSD---LEKPYSLGLTLYSLRVTSTDASFTEYLLSTDP 204

Query: 390 FRTNCIHSQVILGYFGIF 443
             ++CIH  + + YF I+
Sbjct: 205 IPSSCIHKIITVDYFSIY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,148
Number of Sequences: 5004
Number of extensions: 52021
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)