Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M15
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    30   1.5  
07_03_0956 - 22869166-22871145,22871800-22871959,22872311-228723...    29   2.6  

>06_03_0785 -
           24563310-24565004,24565302-24565384,24565484-24566039,
           24566397-24566513,24566565-24567131,24568632-24568702,
           24569833-24569903,24570270-24570441,24571229-24572212,
           24573128-24574808
          Length = 1998

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/49 (24%), Positives = 30/49 (61%)
 Frame = +1

Query: 115 MCTKYETFCEILIEKKVMFTENNHLNVNNF*YQYLKHKVNSQFVLKKFL 261
           +C  +  F ++ I K+++ T +  +++ NF +  L+ ++ ++  +KKFL
Sbjct: 247 VCVSH-VFDKVRITKEILTTIDKSIDLTNFNFSMLQEELKNKITMKKFL 294


>07_03_0956 -
           22869166-22871145,22871800-22871959,22872311-22872375,
           22872464-22872529,22872634-22872691,22872834-22872925,
           22873093-22873332
          Length = 886

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
 Frame = +1

Query: 76  LGCFNSIXA---QDKEMCTKYETFCEILIE----KKVMFTENNH 186
           LGC NSI     Q+++   +  T C+++IE     K+ FTE+NH
Sbjct: 192 LGCHNSIDLCQLQNRDYSQEIFTACQVVIELIPKDKLNFTESNH 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,045
Number of Sequences: 37544
Number of extensions: 264297
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)