Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M15
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    27   0.13 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.89 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.89 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.89 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   8.3  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 154 EKKVMFTENNHLNVNNF*YQYLKHKVNSQFVLKKFLSN 267
           E+K++ + +N+ N NN  Y+Y  +  N +   K ++ N
Sbjct: 311 ERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIIN 348


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 439 YSIDHTSRFRKC*LQVRNRACIVYPLSLFRRFFSGLWLFLEPVVELTLLFIF 594
           + ID    FR   +Q  N   ++    L  + +   W FL+ +  + L +IF
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 439 YSIDHTSRFRKC*LQVRNRACIVYPLSLFRRFFSGLWLFLEPVVELTLLFIF 594
           + ID    FR   +Q  N   ++    L  + +   W FL+ +  + L +IF
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 439 YSIDHTSRFRKC*LQVRNRACIVYPLSLFRRFFSGLWLFLEPVVELTLLFIF 594
           + ID    FR   +Q  N   ++    L  + +   W FL+ +  + L +IF
Sbjct: 132 FLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/66 (19%), Positives = 28/66 (42%)
 Frame = -3

Query: 683 DHNNXTDSSIQIQNHLFQLRCQHNTLVECQNINNNVNSTTGSKKSHSPEKNRRNKLSGYT 504
           +H N       + + +   RC +    +  + N+N N    S KS +   N+ N  + ++
Sbjct: 394 EHVNFQILGANVNDLIRNSRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHS 453

Query: 503 IQARFR 486
            ++  R
Sbjct: 454 SKSNNR 459


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 157 KKVMFTENNHLNVNNF*YQYLKHKVNSQFVLKKFLSN 267
           K +    NN ++ NN+ Y Y  +  N+    KK   N
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 157 KKVMFTENNHLNVNNF*YQYLKHKVNSQFVLKKFLSN 267
           K +    NN ++ NN+ Y Y  +  N+    KK   N
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 608 LVECQNINNNVNSTTGSKKSHSPEKNRRN 522
           L  CQ  +NN   T G+  +++   N  N
Sbjct: 216 LETCQRNSNNSTITAGNANTNASNNNNNN 244


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 538 RRTGETNSAGIQYKHDFGLEANTSETYLYGLLNI 437
           R  G  NS  +  +HD GL A        G LNI
Sbjct: 40  RCMGGINSRNMDIEHDPGLAAVLQYLIRSGQLNI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,885
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)