Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M13
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.83 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 352  PRFTKSRNYARNPLLQAIRVTYR 284
            P+  K RNY R+ L++A+R   R
Sbjct: 1035 PKRGKYRNYDRDSLVEAVRAVQR 1057


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 641 YGNRQIIYFXITLNYYMT*PSPFFTSLKFSD 549
           +GN  +I   +   Y  T  + F TSL F+D
Sbjct: 61  FGNTLVILAVVRERYLHTATNYFVTSLAFAD 91


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 97  QNQHLYSISNTLIHINNKISYYFKR 171
           +++ + S+SN  IH NN    Y K+
Sbjct: 311 ESKIISSLSNKTIHNNNNYKNYNKK 335


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 115 SISNTLIHINNKISYYFKRH 174
           S+SN  IH NN   Y +  +
Sbjct: 84  SLSNKTIHNNNNYKYNYNNN 103


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 115 SISNTLIHINNKISYYFKRH 174
           S+SN  IH NN   Y +  +
Sbjct: 84  SLSNRTIHNNNNYKYNYNNN 103


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 115 SISNTLIHINNKISYYFKRH 174
           S+SN  IH NN   Y +  +
Sbjct: 84  SLSNKTIHNNNNYKYNYNNN 103


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 115 SISNTLIHINNKISYYFKRH 174
           S+SN  IH NN   Y +  +
Sbjct: 84  SLSNKTIHNNNNYKYNYNNN 103


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 115 SISNTLIHINNKISYYFKRH 174
           S+SN  IH NN   Y +  +
Sbjct: 84  SLSNKTIHNNNNYKYNYNNN 103


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 115 SISNTLIHINNKISYYFKRH 174
           S+SN  IH NN   Y +  +
Sbjct: 317 SLSNKTIHNNNNYKYNYNNN 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,182
Number of Sequences: 438
Number of extensions: 4052
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)