Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M12
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   191   8e-50
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   1.7  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  191 bits (465), Expect = 8e-50
 Identities = 94/171 (54%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
 Frame = -3

Query: 641 AIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PN 465
           +I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   
Sbjct: 285 SIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVP 344

Query: 464 IL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*Y 285
           +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               
Sbjct: 345 MLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WS 403

Query: 284 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXI 132
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+  +
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPEAFV 454


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 31  FIRWFILASQIIIHLLLPAHRAISAPXAAIXFHAXYXSG*SEYRRGIP 174
           ++ +FI+  Q+ +H  LPAH A S    A    A   S  S    G+P
Sbjct: 659 YLPFFIMGRQLFLHHYLPAHLAGSLLVGAFIQLACRKSFRSPVSAGVP 706


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 276 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 148
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 419 LTGVILANSSIDITLHDTYYVV 354
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,346
Number of Sequences: 5004
Number of extensions: 25900
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)