Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M11
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.3  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   9.1  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   9.1  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 567 SLIPREQNICFIVMKTESSQNNNPQIEWRIPYICK--PSQNSAFPNLVKIVTDFK 725
           S IP+   +     ++ S  +++P+I   +P+I    PS  ++ PN +K V+DFK
Sbjct: 47  SAIPQSNALNTTPNESTSQIDSSPKIPSAVPHISTPNPSSGASTPN-IKRVSDFK 100


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 687 HYSV-TACRYMVFSTLFGGYYFESFQFSLQ-*SKCFAL 580
           H+++ T C+  V +T+  GY    ++FSL+    CF+L
Sbjct: 180 HFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSL 217


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 247 LQAEDVTNHSDYFNEHTYFTL*FLSQIIFSNNEFSLSF 360
           ++ +D+     ++ E   F +  + Q +F  NEFSLSF
Sbjct: 17  IRVKDLDKSLKFYTE--VFGMKLIDQWVFEENEFSLSF 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,091
Number of Sequences: 5004
Number of extensions: 56845
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)