Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M11
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z83119-4|CAE17866.1|  226|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a prote...    28   6.4  

>AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical
           protein C09E8.1b protein.
          Length = 756

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -1

Query: 770 NLPLXTSKYFTFLE*-FEICDYFNEIGECTIL*RLADIWYSPLYLGVII-LRAFSFHYNK 597
           ++PL T+   T+L   F I  Y++ +G+  IL +   +    LY+ VII L  F FH+  
Sbjct: 185 SIPLQTAHILTWLIIWFSISKYYDRLGD--ILLKGFLLVPIILYIAVIIGLTGFGFHFTT 242

Query: 596 ANV 588
           AN+
Sbjct: 243 ANI 245


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -1

Query: 770 NLPLXTSKYFTFLE*-FEICDYFNEIGECTIL*RLADIWYSPLYLGVII-LRAFSFHYNK 597
           ++PL T+   T+L   F I  Y++ +G+  IL +   +    LY+ VII L  F FH+  
Sbjct: 185 SIPLQTAHILTWLIIWFSISKYYDRLGD--ILLKGFLLVPIILYIAVIIGLTGFGFHFTT 242

Query: 596 ANV 588
           AN+
Sbjct: 243 ANI 245


>Z83119-4|CAE17866.1|  226|Caenorhabditis elegans Hypothetical
           protein R05H10.7 protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 83  ALIALLHFXHKHLQQFTFQNINXKLKRNITLVSEFYCNMLVTTLKLQSANL 235
           A I +L+  H+       QNIN  L R ++ VSE Y    + T K+ + N+
Sbjct: 103 AFIKMLNTCHEDFWNLAPQNINVVLHREVSSVSEKYQRRGIAT-KMLTTNM 152


>AF099917-5|AAC68783.2|  219|Caenorhabditis elegans F-box a protein
           protein 24 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 94  SNECKL**XKENRTREMKQRDERERHKKVIK 2
           SNEC        RTR  ++RDERE   +++K
Sbjct: 21  SNECNEHENTRTRTRTRRERDERESFIEILK 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,101
Number of Sequences: 27780
Number of extensions: 313141
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)