Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M09
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595...    28   5.3  

>03_02_0640 -
           10058828-10058971,10059066-10059201,10059512-10059590,
           10060861-10060927,10061014-10061100,10061474-10061567,
           10061663-10061749,10062267-10062328,10062485-10062584,
           10062729-10062827,10062969-10063033,10063617-10063694,
           10063787-10063873,10064383-10064466,10064860-10064955,
           10065045-10065122,10066049-10066139,10066224-10066315,
           10066433-10066560,10067421-10067495,10067670-10067850
          Length = 669

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 30  QNLLSSFVSAVXTHHFILII*NPPVTIXYGHCAFFFSNL 146
           +NLL  F+ A      I ++      + Y HC FF+S L
Sbjct: 205 KNLLEEFIEAKLDEFIIPLVQGNIQNLRYFHCLFFYSYL 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,910
Number of Sequences: 37544
Number of extensions: 234129
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)