Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M08
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   105   2e-24
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   104   7e-24
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   2.2  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.8  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   5.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.6  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  105 bits (253), Expect = 2e-24
 Identities = 46/67 (68%), Positives = 55/67 (82%)
 Frame = -2

Query: 415 PADCILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLI 236
           P   +LGYTED VVS+DF GD+HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+
Sbjct: 269 PMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLV 328

Query: 235 KYIQSKD 215
            Y  SKD
Sbjct: 329 AYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  104 bits (249), Expect = 7e-24
 Identities = 45/67 (67%), Positives = 55/67 (82%)
 Frame = -2

Query: 415 PADCILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLI 236
           P   +LGYTED VVS+DF GD+HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+
Sbjct: 269 PMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLV 328

Query: 235 KYIQSKD 215
            Y  +KD
Sbjct: 329 AYTAAKD 335


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 319 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 227
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 185 LTFIHLIKSLIFRLNVLDEINDS---AGITIFIVVPTDQLHKVVIQRNSSGSIKD 340
           + F H I+SL+F L+  +E+  S   +G   +++      +  ++Q+  SGS+ D
Sbjct: 502 IPFAHAIESLLFSLDEENELQVSCAASGTLNYLIRHRLFSYSTLVQKGFSGSVFD 556


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 322 GISLNDNFVKLISWYDNEYGYSSRVIDLI 236
           G+ L    VK I  Y  + GYSS V+D +
Sbjct: 97  GLKLGVLLVKEIIQYSEKLGYSSMVLDTL 125


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 CWNNHIHCRTN*SASQSCHSKKFQRQHQRLKSVNHQ 360
           C  ++I C    ++++  HS+  +  HQ+   +NHQ
Sbjct: 92  CLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQ 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,851
Number of Sequences: 5004
Number of extensions: 27680
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)