Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_M08
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 101 3e-22
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 100 6e-22
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 98 3e-21
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 94 5e-20
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 94 5e-20
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 59 1e-09
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 54 5e-08
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 2.8
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543... 28 3.7
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 27 6.4
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 27 6.4
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 27 6.4
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 27 8.5
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 101 bits (241), Expect = 3e-22
Identities = 42/59 (71%), Positives = 55/59 (93%)
Frame = -2
Query: 403 ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 227
I+GY E+ +VS+DF+GDS SSIFDA AGI+LNDNFVKL++WYDNE+GYS+RVIDLI+++
Sbjct: 298 IIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHM 356
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 100 bits (239), Expect = 6e-22
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = -2
Query: 403 ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 227
ILGY E+ +VS+DF GD+ SSIFDA AGI+LNDNFVKL+SWYDNE+GYSSRV+DLI+++
Sbjct: 323 ILGYVEEDLVSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVVDLIRHM 381
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 97.9 bits (233), Expect = 3e-21
Identities = 43/61 (70%), Positives = 54/61 (88%)
Frame = -2
Query: 403 ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 224
ILGY E+ +VS+DF GDS SSIFDA AGI+L+D FVKL+SWYDNE+GYS+RVIDLI+++
Sbjct: 294 ILGYVEEDLVSTDFQGDSRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVIDLIRHMH 353
Query: 223 S 221
S
Sbjct: 354 S 354
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 93.9 bits (223), Expect = 5e-20
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = -2
Query: 403 ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 227
ILGYT++ VVS+DFIGD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 350 ILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIGHM 408
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 93.9 bits (223), Expect = 5e-20
Identities = 39/59 (66%), Positives = 53/59 (89%)
Frame = -2
Query: 403 ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 227
ILGYT++ VVS+DF+GD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 409 ILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSFMKLVSWYDNEWGYSNRVLDLIAHM 467
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = -2
Query: 415 PADCILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLI 236
P IL + +VS DF SS DA+ + + D+ VK+++WYDNE+GYS RV+DL
Sbjct: 348 PLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 407
Query: 235 KYIQSK 218
+ SK
Sbjct: 408 HLVASK 413
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 54.0 bits (124), Expect = 5e-08
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = -2
Query: 403 ILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQ 224
IL + +VS DF S DA+ + + D+ VK+I+WYDNE+GYS RV+DL +
Sbjct: 339 ILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 398
Query: 223 SK 218
++
Sbjct: 399 NQ 400
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 267 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 365
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>02_05_0746 -
31451303-31453168,31453243-31453357,31454296-31454351,
31455057-31455138,31455484-31455517,31455912-31456016,
31456108-31456387
Length = 845
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = -2
Query: 406 CILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYI 227
C L YTE + F+GD ++ + G L + Y GY + D++ +
Sbjct: 186 CRLSYTETALKLDSFVGDVEDAVSSSVTG-KLKSRAESSLKTYHVPIGYLKTIEDILSSV 244
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -2
Query: 349 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD*TLDQMYECKDIFQH 170
H +I + AG+S+ +NFV +++ + R+ L D T+ + + F H
Sbjct: 470 HDTILEFIAGLSIEENFVAILNGQCSTSDLPKRIYRLSLQNSKDDITIP---DATERFSH 526
Query: 169 VR 164
VR
Sbjct: 527 VR 528
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -2
Query: 349 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKY 230
H IFD S +NF+ + + ++ +G ++ L+ Y
Sbjct: 491 HDVIFDLIISKSAEENFITVFGYQNHAFGPQDKIRRLVHY 530
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 349 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 245
H + D +S +NFV +++ D GYS + +
Sbjct: 449 HDMVLDLICSLSSEENFVTILNGCDLSQGYSLKYV 483
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 26.6 bits (56), Expect = 8.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -2
Query: 349 HSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD*TLDQMYECKDIFQH 170
H +I + AG+S+ +NFV +++ + R+ L D T+ + + F H
Sbjct: 507 HDTILEFIAGLSIEENFVAILNGQCSVSDLPKRIYRLSLQNSKDDITIP---DATERFSH 563
Query: 169 VR 164
VR
Sbjct: 564 VR 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,798,699
Number of Sequences: 37544
Number of extensions: 141232
Number of successful extensions: 315
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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