Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M07
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...   110   2e-25
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    32   0.068
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    32   0.068
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    29   0.64 
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.9  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   1.9  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   1.9  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.9  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    26   4.5  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    26   4.5  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   5.9  

>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score =  110 bits (264), Expect = 2e-25
 Identities = 48/118 (40%), Positives = 77/118 (65%)
 Frame = -1

Query: 667 GHGEYTEIDGEKEFFAVCNKSQNVVCHXYKSDSPRCKIVDMHLKILAKKHIETRFVKLDV 488
           GH ++  ++ E+E       S+ VV H Y  D  RCKI+D HL+ +AK H ET+F++++ 
Sbjct: 133 GHMQFLTVENEREVMDFTLSSKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKFIRIEA 192

Query: 487 ERAPFLTGRLKIRVIPTLGLVKDNKTKDFIVGFTDLGNRDDFSTDILEWRIARSEAIE 314
             APFL  +L ++V+P +    +++  D I+GF DLGN+DDF T +LE+R+ +S AI+
Sbjct: 193 ANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSSAID 250


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 25/102 (24%), Positives = 48/102 (47%)
 Frame = -1

Query: 613 NKSQNVVCHXYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTL 434
           +K   VV H ++   P CK++   L+ LA  + + +FVK+  ++A          ++PTL
Sbjct: 105 SKEVFVVVHMFQDSLPACKLLAAILERLAPMYPQIKFVKIPGKQA---VENYPEAMMPTL 161

Query: 433 GLVKDNKTKDFIVGFTDLGNRDDFSTDILEWRIARSEAIEYS 308
            +      +  I+    LG  +    D+ E  + R+ A++ S
Sbjct: 162 LIYGHGDLQQQILTLATLGGMNTSVVDVAE-ALVRAGALKDS 202


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 16/86 (18%), Positives = 40/86 (46%)
 Frame = -1

Query: 649 EIDGEKEFFAVCNKSQNVVCHXYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFL 470
           ++    EF ++  + + VV   + +    CK +    +  +  + +  F+K+DV++   +
Sbjct: 4   QVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEI 63

Query: 469 TGRLKIRVIPTLGLVKDNKTKDFIVG 392
                +  +P+  L K+ +  + IVG
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVG 89


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 668 WSRRIHRDRWRERVLCCLQ*KSECRVPFXQVGLAPLQDRGHAPQDL 531
           W RR H  RW  ++ C     S  ++P   V + P +D    PQD+
Sbjct: 42  WFRRRHHCRWCGKLFCYNCCNSFAKLPVSSVSVDPTEDL--IPQDM 85


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  FSGRSKSIWTSHSAVILWET 158
           +SG S+S+WT  +   +W+T
Sbjct: 32  YSGNSESVWTGENITSIWKT 51


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  FSGRSKSIWTSHSAVILWET 158
           +SG S+S+WT  +   +W+T
Sbjct: 32  YSGNSESVWTGENITSIWKT 51


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  FSGRSKSIWTSHSAVILWET 158
           +SG S+S+WT  +   +W+T
Sbjct: 4   YSGNSESVWTGENITSIWKT 23


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  FSGRSKSIWTSHSAVILWET 158
           +SG S+S+WT  +   +W+T
Sbjct: 32  YSGNSESVWTGENITSIWKT 51


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = -1

Query: 481 APFLTGRLKIRVIPTLGLVKDNKTKDFIVGFTDLGNRDDFSTDILEWRIARSEAIE 314
           APF  G L  RV     L      KDFI  F  L N D F+  + E  I   +A+E
Sbjct: 203 APFCHGLLTGRVKTAEDL------KDFIKAFPFLRNMDKFNPKVFEKNIPFLKAVE 252


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = -1

Query: 562 CKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKDNKTKDFIVG 392
           CK +   L+ L++++ +  F+ ++ ++   +  +  +  +PT+ L +  +  D IVG
Sbjct: 50  CKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVG 106


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 244 FCSECVRTSVSWLPMEGPTGHQNTLLL 324
           FC EC++T++     E P  H+  +LL
Sbjct: 302 FCEECIQTALLDSDFECPNCHRKDVLL 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,848
Number of Sequences: 5004
Number of extensions: 56430
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)