Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M06
         (547 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000498371 Cluster: hypothetical membrane-spanning p...    32   9.9  
UniRef50_A0DTD8 Cluster: Chromosome undetermined scaffold_63, wh...    32   9.9  

>UniRef50_UPI0000498371 Cluster: hypothetical membrane-spanning
           protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           hypothetical membrane-spanning protein - Entamoeba
           histolytica HM-1:IMSS
          Length = 217

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 520 MLILFRISDK*LKSVVCSRYINSVLTFATYRLLIYFW*LKVNSIIIILNENQTT 359
           MLIL  +S K L +++ S+ I + L F T  + I F   K+N I+  +    TT
Sbjct: 64  MLILIFLSSKLLHNLIYSKVITTFLLFTTIVIFISFVTRKINLIVQCIGGLSTT 117


>UniRef50_A0DTD8 Cluster: Chromosome undetermined scaffold_63, whole
            genome shotgun sequence; n=6; Eukaryota|Rep: Chromosome
            undetermined scaffold_63, whole genome shotgun sequence -
            Paramecium tetraurelia
          Length = 2465

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 384  IIILLTFNYQK*INRR*VANVNTEFIYLE--QTTDLSHLSEIRNKIN 518
            I I+L F+ Q+ I +  V N+N +FI LE  Q T+  +  E  NKIN
Sbjct: 1594 ISIILFFSIQQYIIKSYVININIQFILLEEDQATNQINFIEENNKIN 1640


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,972,035
Number of Sequences: 1657284
Number of extensions: 6037226
Number of successful extensions: 8759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8759
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)