Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M05
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.3  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   3.3  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   4.3  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.9  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 624 VHIDNVKLSILFME-KLFV*NFCLHKTNEKGFL 529
           +HIDN K+++LF + K+FV      K N  G+L
Sbjct: 22  IHIDNSKVALLFSKSKVFVHPTSKMKDNISGYL 54


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 274 HFKIFKRLFCLLSNRFKTVTNISQNNIVL 360
           HF++ +R  CL SN + T + +SQN + L
Sbjct: 519 HFQVAERALCLWSNEYFT-SLVSQNVVTL 546


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +3

Query: 54  QHSSFPYNMXYXILNVNITCVLXIIRREV*RKYRSKDSLNIKHQKHTHTPRQYRYTLLLI 233
           Q S   Y + Y + + +IT +  +I  E+    R+ +SL  +   + H P  Y+Y L+L+
Sbjct: 194 QSSGLNYKLIYQLYH-DITNLDILITNEL---LRAIESLLRRPMLYCHDPADYQYLLILL 249

Query: 234 K 236
           +
Sbjct: 250 E 250


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 584 KNCSFKISVFIKQMKKVFFLSLTLLDN 504
           +N + K   FIK MKKV  L   LL N
Sbjct: 855 ENMNIKEPTFIKLMKKVNILESRLLSN 881


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,438
Number of Sequences: 5004
Number of extensions: 47208
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)