Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M05
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    28   5.9  
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805...    28   7.8  

>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 609 VKLSILFMEKLFV*NFCLHKTNEKGFLFEPDIIR*FEFLAFL-THNVI 469
           V LS++ +  LF   F  H T++  F F P +I  F F+AF+  +N+I
Sbjct: 244 VLLSVIILFILFF--FQKHGTSKVSFTFSPIMILWFTFVAFIGLYNII 289


>04_04_1401 +
           33279092-33279286,33280223-33280306,33280459-33280524,
           33280945-33281028,33281181-33281246,33281719-33281802,
           33281955-33282020,33282323-33282388,33282667-33282726,
           33282805-33282888,33282968-33283111,33283552-33283586,
           33283694-33283746,33283828-33283928,33284516-33284974
          Length = 548

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 615 DNVKLSILFMEKLFV*NFCLHKTNEKGFLFEPDIIR*FEF 496
           D  K S+ F+  L     C H+ + KGFL   D    FEF
Sbjct: 358 DITKNSLRFLRFLTEIEICTHEDHYKGFLLTADYSSVFEF 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,311
Number of Sequences: 37544
Number of extensions: 225519
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)