Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M03
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     29   0.27 
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   0.84 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   5.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    24   7.8  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    24   7.8  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 244 SIPVETVAASYLQNKLQRXWSMLGVGNSP 158
           S+P +  A  YL+N++ R WS +    SP
Sbjct: 48  SLPTQQAAVIYLKNRVSRSWSSIDDAPSP 76


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 339 ARSSEGRGDMATGALLHECNSF 404
           A  ++GR    TGA+++ECNSF
Sbjct: 289 AYDAQGRVRADTGAVIYECNSF 310


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 251 ELLDPGGDGGCVVLTEQAAALLVHARSREQ 162
           + L+P  D    VL++ A ALL H  S E+
Sbjct: 18  QALEPISDADASVLSDYAMALLRHDSSEEE 47


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 156 RGLFPTPSMDQXRCSLFCKYDAATVSTGI 242
           R LFPT +      S F +Y+  TVS  +
Sbjct: 512 RNLFPTSNSGNQSTSSFSRYNQPTVSVDL 540


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 243 EEFDSCGGYRAPKKARP 293
           E F  C GY+APKK  P
Sbjct: 193 EIFVVCRGYKAPKKLDP 209


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 274 ALYPPQLSNSSIPVETVAASYLQNKLQRXWSM---LGVGNSP 158
           A+Y P+ + ++    T  A  + N   + W +    G+G SP
Sbjct: 665 AIYDPKTAYNTFAASTFTADKIDNGASKTWYLAMAAGMGGSP 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,298
Number of Sequences: 5004
Number of extensions: 23489
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)