Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_M03
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 30 0.73
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 30 0.73
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 28 2.9
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 3.9
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 5.1
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 27 6.8
U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical pr... 26 9.0
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 0.73
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 192 RCSLFCKYDAATVSTGIEEFDSCGGYRAPKKARPSVSPLYTTTKIRQQAARSS 350
R SL +YD T ST S AP P+VSP TTT+ AR+S
Sbjct: 461 RFSLNYRYDPVTFSTSAPTTTSTTTTTAPITV-PTVSPTTTTTRQTTTTARTS 512
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 0.73
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 192 RCSLFCKYDAATVSTGIEEFDSCGGYRAPKKARPSVSPLYTTTKIRQQAARSS 350
R SL +YD T ST S AP P+VSP TTT+ AR+S
Sbjct: 461 RFSLNYRYDPVTFSTSAPTTTSTTTTTAPITV-PTVSPTTTTTRQTTTTARTS 512
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 5 LYIIAS*QTLQSASSFFLISPAXQST 82
+Y+ A TLQ A+S F + P QST
Sbjct: 463 MYLFAEALTLQQANSLFCLGPVYQST 488
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 5 LYIIAS*QTLQSASSFFLISPAXQST 82
+Y+ A TLQ A+S F + P QST
Sbjct: 463 MYLFAEALTLQQANSLFCLGPVYQST 488
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -2
Query: 362 APALAAPRCLLS-DLRCGIQRRDGGTRLLRS--PVSPAAVELLDPGGDGGCVVLTEQAAA 192
AP P C + +C Q G+ + + PV+ + + P D GCV + A
Sbjct: 352 APETCIPACQPACQPQCVYQYLSSGSSGISTVPPVTKVCISICQPACDPGCVAIYTTTPA 411
Query: 191 LLVHARSREQPA 156
L H S+ QPA
Sbjct: 412 PL-HCVSQCQPA 422
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 220 QPPSPPGSRSSTAAGDTG 273
+PP+PP S SST A TG
Sbjct: 10 RPPAPPSSVSSTTASTTG 27
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 220 QPPSPPGSRSSTAAGDTG 273
+PP+PP S SST A TG
Sbjct: 10 RPPAPPSSVSSTTASTTG 27
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 311 YHNEDQTAGSEEQRGQGRHGDRR 379
Y D+T G E++ + RHG++R
Sbjct: 57 YEEADETGGDSERKRRHRHGNKR 79
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 91 CRCSVCRALHRRSGLLATEIA 153
CRC+ LHRR G++ +A
Sbjct: 103 CRCNTTNTLHRREGVVLEVVA 123
>U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical
protein C28C12.3 protein.
Length = 195
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 272 GSEEGASLRLAAVYHNEDQTAGSEEQ 349
G+ S +LA +Y N+DQT ++E+
Sbjct: 111 GNLTAVSAQLATIYQNKDQTRKAQEE 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,439,137
Number of Sequences: 27780
Number of extensions: 158245
Number of successful extensions: 550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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