Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M03
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   9.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 304 GETEGRAFFGALYPPQ 257
           G    R+F+ A YPPQ
Sbjct: 15  GNQLNRSFYSASYPPQ 30


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 128 LGCSLRKLRSR 160
           L CSLRKL SR
Sbjct: 80  LDCSLRKLNSR 90


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/41 (19%), Positives = 20/41 (48%)
 Frame = -2

Query: 344 PRCLLSDLRCGIQRRDGGTRLLRSPVSPAAVELLDPGGDGG 222
           P C++ + +C ++R++   +  +    P +  +    G GG
Sbjct: 254 PECVVPEYQCAVKRKE--EKAQKEKDKPNSTTMNGSPGSGG 292


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 4/16 (25%), Positives = 12/16 (75%)
 Frame = -2

Query: 344 PRCLLSDLRCGIQRRD 297
           P C++ + +C ++R++
Sbjct: 51  PECMVPEYQCAVKRKE 66


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 179 ARSREQPATAISVASSPERRW 117
           A + E    A SVA  PE  W
Sbjct: 610 AFAEEYTEEAYSVAQEPEEEW 630


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 164 VPDSEHG 184
           VPDSEHG
Sbjct: 541 VPDSEHG 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,999
Number of Sequences: 438
Number of extensions: 1913
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)