Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M02
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8D4K3 Cluster: ABC-type dipeptide transport system, pe...    36   0.60 

>UniRef50_Q8D4K3 Cluster: ABC-type dipeptide transport system,
           periplasmic component; n=5; Gammaproteobacteria|Rep:
           ABC-type dipeptide transport system, periplasmic
           component - Vibrio vulnificus
          Length = 545

 Score = 36.3 bits (80), Expect = 0.60
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = -3

Query: 359 KYLVTVPGNKYCTSIFR*RQS-SNFVFVVERYPCGTKHLY*SIR*CATDITLNETKINRL 183
           K L T+      T +F   ++ S FV+ +ERY    KH++  +    T    N       
Sbjct: 132 KNLQTITAKDATTVVFNLNEADSTFVWNLERYHIVPKHIWSKVEDLTTFTNPNPVGSG-- 189

Query: 182 FPTADVQYLSPGTVHLCKVPVLYYSKNLILTQVNFAYCNN 63
            P   V+Y+ P  + LC+ P  Y      L  VNF   N+
Sbjct: 190 -PMTVVKYVKPQQMELCRNPNYYLEGRPYLDCVNFRSYND 228


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,079,186
Number of Sequences: 1657284
Number of extensions: 10558181
Number of successful extensions: 18288
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18278
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)