Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M02
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   3.8  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.1  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   6.7  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 158 LSPGTVHLCKVPVLYY-SKNLILTQVN 81
           + PGT H  K+ +LYY S  L LT ++
Sbjct: 199 IGPGTYHSSKLELLYYISSTLTLTSLD 225


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 252 FRPTRVTLYNKNKIRRLSLSKYRCAVFIAWY 344
           FR     LYN N IRR     +R  V ++ Y
Sbjct: 255 FRSQNANLYNLNSIRRNLTKHFRNRVLVSLY 285


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 218 DITLNETKINRLFPTADVQYLSPGTVH 138
           +I  +ETK+N+    A ++Y +PG  H
Sbjct: 167 NIIEDETKVNKSLNAALLRYFNPGGAH 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,591
Number of Sequences: 5004
Number of extensions: 48250
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)