Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M02
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928...    28   5.2  
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739...    28   6.9  
08_02_1007 - 23495941-23496486,23496933-23497094,23497184-234973...    27   9.2  

>11_06_0384 +
           22990773-22990949,22991315-22991496,22992533-22992887,
           22993124-22993426,22994077-22994313
          Length = 417

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 296 SNFVFVVERYPCGTKHLY*SIR*CATDITLNETKINRLFPTADVQYLSP 150
           +N + VV         L+  I+    D+T++ T  N + P  DV+YL P
Sbjct: 128 ANLIGVVRGPKYDGSFLHDKIKSLTHDVTISNTVTNIVVPAFDVKYLQP 176


>02_04_0525 -
           23672984-23673085,23673315-23673419,23673820-23673979,
           23674085-23674162,23674383-23674524,23674641-23674785,
           23674888-23674950,23675042-23675101,23675364-23675441,
           23675524-23675598,23675744-23675860,23675960-23676190,
           23676300-23676419,23676512-23676588,23676669-23676769,
           23676844-23676950,23677094-23677251,23677383-23677599
          Length = 711

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 344 VPGNKYCTSIFR*RQSSNFVFVVERYPCGTKH 249
           VP  KYC SI+  R+      +V   P G+ H
Sbjct: 73  VPRQKYCESIYETRRRKTRTVMVGNVPLGSDH 104


>08_02_1007 -
           23495941-23496486,23496933-23497094,23497184-23497361,
           23497473-23497882
          Length = 431

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -3

Query: 254 KHLY*SIR*CATDITLNETKINRLFPTADVQYLSPGTVHLCKVPVLYYSKNLILTQV 84
           K+L+  ++    D  +NET  N + PT D++ L P T       +   SKN +L+ V
Sbjct: 155 KYLHSVVQSLLGDKRVNETITNVVIPTFDIKLLQPITFSRFDAQI-DVSKNALLSDV 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,559
Number of Sequences: 37544
Number of extensions: 262610
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)