Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M01
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   0.85 
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    23   2.1  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   2.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   4.5  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   4.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   4.5  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    24   6.0  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    24   7.9  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    24   7.9  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 145 DKLTHRCWLERAYRAHYVYCAVDND 71
           DK++  C LER     + YC VDN+
Sbjct: 152 DKISQSCLLERLDDEAHQYCYVDNE 176


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 22.6 bits (46), Expect(2) = 2.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 124 WLERAYRAHYVYCAVDND 71
           W  R +RAH+ Y   D D
Sbjct: 142 WWSRDHRAHHRYTDTDKD 159



 Score = 21.4 bits (43), Expect(2) = 2.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 133 HRCWLERAYRA 101
           HR W  RAY+A
Sbjct: 110 HRLWSHRAYKA 120


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 59  NLRGIVIHSAIHVVRP 106
           N  G VIHSAIH  RP
Sbjct: 154 NRAGYVIHSAIHRARP 169


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 115  RAYRAHYVYCAVDNDSP 65
            R +R+HY++C++  +SP
Sbjct: 1459 RDFRSHYIHCSLALESP 1475


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 217 RSKIKLCICYQHLND 261
           RS+I +C CY  LND
Sbjct: 589 RSQILICWCYYRLND 603


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 11  ISVVGXIQILWNVHINNLRGIVIHSAIHVVRPVRAFQPAAVS*LVRRWQQRLLHITN 181
           I +V  I I  +++      + +H  +   RP   F           WQQ +L ITN
Sbjct: 172 IGLVYNISITLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSITN 228


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 298 IVNVVTSCELTNNRLDVDSKCTVLF 224
           ++N +    LTNN L +   CT+LF
Sbjct: 656 LINNLKKFFLTNNDLQIIQGCTILF 680


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 264 FVNSQLVTTFTIFLFAPLGDERSVQVT 344
           FV  Q V +  IF+++ +G+E + +++
Sbjct: 242 FVKFQRVNSLVIFIYSNVGEEETTKIS 268


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 235 TVLFSTCRTSCVGI*LIDVCNVQ*PLLPTS 146
           TV + +  T C+ I L+D C    P +PT+
Sbjct: 98  TVGYVSMDTLCIAISLLDRCFTVKPTIPTT 127


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 121 TSSGELTCQTLXXXXXXHYKRQLIKFPHMRYGRSKIKL 234
           T S ELT          +Y + +  +P+++Y RS + L
Sbjct: 15  TDSLELTSNKQDDQVISNYLKPVRSYPYIKYSRSSLLL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,900
Number of Sequences: 5004
Number of extensions: 26530
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)