Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M01
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    29   1.2  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    27   5.0  
AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormo...    26   8.7  
AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 98  VRPVRAFQPAAVS*LVRRWQQRLLHI 175
           VRP  ++ P ++  LVRRWQ   L I
Sbjct: 863 VRPRSSYAPPSIEMLVRRWQDSCLEI 888


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +1

Query: 16  RCRXYTNTLECSYKQSQGNRYPQRNTRSAPGTRVPTSSGELTCQ 147
           RC     T E + K SQG  YP         T +PT +     Q
Sbjct: 539 RCNDTEETREVTCKDSQGRAYPLEKCLVDNSTEIPTDTRSCATQ 582


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +1

Query: 16  RCRXYTNTLECSYKQSQGNRYPQRNTRSAPGTRVPTSSGELTCQ 147
           RC     T E + K SQG  YP         T +PT +     Q
Sbjct: 539 RCNDTEETREVTCKDSQGRAYPLEKCLVDNSTEIPTDTRSCATQ 582


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +1

Query: 16  RCRXYTNTLECSYKQSQGNRYPQRNTRSAPGTRVPTSSGELTCQ 147
           RC     T E + K SQG  YP         T +PT +     Q
Sbjct: 539 RCNDTEETREVTCKDSQGRAYPLEKCLVDNSTEIPTDTRSCATQ 582


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 217 RSKIKLCICYQHLNDCLSTHN 279
           + ++ LC+C++  N C+ST +
Sbjct: 307 KEQVDLCLCHKEYNHCVSTRD 327


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 217 RSKIKLCICYQHLNDCLSTHN 279
           + ++ LC+C++  N C+ST +
Sbjct: 269 KEQVDLCLCHKEYNHCVSTRD 289


>AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 72 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 230 NCAFAINI*TIVCQLTTCYNIYYFFVC 310
           +C  AI +  I  Q+ T  NIY+  +C
Sbjct: 289 DCDIAIRLGNITLQIVTVTNIYHDLIC 315


>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 82  VDNDSPEIVYMNIPKYLY 29
           V ND P+++YMN  K+ Y
Sbjct: 239 VANDRPDLMYMNFTKWSY 256


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 79  DNDSPEIVYMNIPKYLYXTYNANN 8
           D   PEI Y N+ ++++   N+NN
Sbjct: 615 DTHGPEIDYENVEQHMFSFLNSNN 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,071
Number of Sequences: 27780
Number of extensions: 160606
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)