Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L19
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    29   0.41 
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   2.9  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    24   8.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   8.8  

>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 343 GGQESFGNELRAVYHSSEIHIPLRSIKHVSAPSFKKFPRLAEL 215
           GG+  + N    + H  E HIPLR  KH+S     + P + EL
Sbjct: 483 GGENYYKNYSARLIH--EYHIPLRLAKHLSHNYGSRAPLILEL 523


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 67  YALRYHCQRTPSSLSPHQRPTNRSIAQKLL*SV*RNSCTLVWCS 198
           +AL  HC   PS+   +   T R I QK L  +    CT VW S
Sbjct: 37  FALDDHCTTAPSTGRMYLGGTWRGIIQK-LDYIQSLGCTAVWIS 79


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 53  EISELTHSATIVKERRHLCRLTKDRLTGQSRKNYY 157
           E  E+T S      +   C L   R T  SRKN Y
Sbjct: 430 EEMEMTRSLAFNDSKSDWCCLASSRSTSISRKNRY 464


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 97  PSSLSPHQRPTNRSIAQ 147
           PSSL P Q+PT +S  Q
Sbjct: 457 PSSLPPWQQPTQQSAVQ 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,959
Number of Sequences: 5004
Number of extensions: 26925
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)