Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_L19
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 30 0.94
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 29 1.2
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 29 1.2
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 29 1.6
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 2.9
11_06_0637 + 25715516-25716459,25718196-25718355 27 5.0
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642... 27 6.6
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 27 8.7
03_06_0745 + 35937173-35938256,35938994-35939721 27 8.7
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = -1
Query: 379 RLKLALAQRQPSGGQESFGNELRAVYHSSEIHIPLRSIKHVSAPSFKKFPRLAE 218
+L + + P GG E A + H PLR H PSF P +E
Sbjct: 168 KLDIYFVKTSPEGGFGMSHREALAQVTAQASHSPLRMFDHTEQPSFSAAPTSSE 221
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 56 ISELTHSATIVKERRHLCRLTKDRLTGQSRKNYYKACSVIHAHSC 190
+ ++ ++K + L +L K +TG ++ N + CSVI H C
Sbjct: 1259 VVNISRGKAMLKNLKKLTQLRKLGVTGINKNNCEELCSVIVKHGC 1303
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 53 EISELTHSATIVKERRHLCRLTKDRLTGQSRKNYYKACSVIHAHS 187
++S I++E ++L +L K ++G SR+N + CS I H+
Sbjct: 834 DVSVAKKGRAILEELKNLTQLRKLGVSGISRRNCREFCSAISGHA 878
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -1
Query: 271 SIKHVSAPSFKKFPRLAELTLRDEDCTTRVCMNYATRFII 152
+I H++ P+ + F + ++RD DC +C++Y F +
Sbjct: 532 TIMHLTLPTRQMFAKEIFESVRDADCYPHICVSYWLLFTV 571
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 204 SRKVNSARRGNFL-NEGALTCLIDLKGICISLEWYTARSSFP 326
+++ +S N + N ALTC+ID K + ++ + SSFP
Sbjct: 40 TKESSSGNTKNLIQNFDALTCVIDAKAFRLQIDEHKKSSSFP 81
>11_06_0637 + 25715516-25716459,25718196-25718355
Length = 367
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 367 ALAQRQPSGGQESFGNELRAVYHSSE 290
ALA+R+ SGG E +E+ A+ H E
Sbjct: 159 ALAERRQSGGAERSADEIPALSHDKE 184
>04_03_0899 +
20662671-20662818,20663655-20663959,20664080-20664265,
20665200-20665274,20665596-20665652
Length = 256
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 364 LAQRQPSGGQESFGNELRAVYHSSEIHIPLRSIKHVSAPSFK 239
+A SGG +F LR ++ S+E H+P S V + +FK
Sbjct: 43 IAAAAVSGGNNAFSWNLRRLFSSNEKHLPAISDPEVES-AFK 83
>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
Length = 1274
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 340 GQESFGNELRAVYHSSEIHIPLRSIKHVSAPSFKKF 233
G FG + V +S++H+ ++ + H S K+F
Sbjct: 353 GLGGFGKVYKGVLPTSKLHVAVKRVSHDSKQGMKEF 388
>03_06_0745 + 35937173-35938256,35938994-35939721
Length = 603
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 65 LTHSATIVKERRHLCRLTKDRLTGQSRKNYYKAC 166
L S IV +RRH R R R NYY AC
Sbjct: 187 LGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPAC 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,922
Number of Sequences: 37544
Number of extensions: 172346
Number of successful extensions: 409
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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