Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L19
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    28   2.5  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        28   2.5  
U53337-1|AAA96183.2|   87|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 284  YPFKVDQTR*CTFV*KIPTSCGINFTGRRLHHTSVHELRYTLYNNFCAIDLL 129
            YP+KV   + CT+  K+P    I  T   +HH S+ +  Y      C  D+L
Sbjct: 1331 YPYKVYSNQFCTWTIKVPKGNRIVAT---VHHFSISQKSYFEGGINCITDML 1379


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 284  YPFKVDQTR*CTFV*KIPTSCGINFTGRRLHHTSVHELRYTLYNNFCAIDLL 129
            YP+KV   + CT+  K+P    I  T   +HH S+ +  Y      C  D+L
Sbjct: 1331 YPYKVYSNQFCTWTIKVPKGNRIVAT---VHHFSISQKSYFEGGINCITDML 1379


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
           protein F39B2.4b protein.
          Length = 1589

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 49  VRNIRTYALRYHCQRTPSSLSPHQRPTNRSIAQKLL*SV*RNS 177
           +RNI  Y L    +R P SLSP Q    R +   +L  V R+S
Sbjct: 163 IRNILRYILESQLRRLPYSLSPEQVNEIRIVENVILHIVDRDS 205


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
           protein F39B2.4a protein.
          Length = 1587

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 49  VRNIRTYALRYHCQRTPSSLSPHQRPTNRSIAQKLL*SV*RNS 177
           +RNI  Y L    +R P SLSP Q    R +   +L  V R+S
Sbjct: 163 IRNILRYILESQLRRLPYSLSPEQVNEIRIVENVILHIVDRDS 205


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 49  VRNIRTYALRYHCQRTPSSLSPHQRPTNRSIAQKLL*SV*RNS 177
           +RNI  Y L    +R P SLSP Q    R +   +L  V R+S
Sbjct: 163 IRNILRYILESQLRRLPYSLSPEQVNEIRIVENVILHIVDRDS 205


>U53337-1|AAA96183.2|   87|Caenorhabditis elegans Hypothetical
           protein R02E12.5 protein.
          Length = 87

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 46  FVRNIRTYALRYHCQRTPSSLSPHQRPTNRSIAQKL 153
           F R   T  +R    +TP  L     PTNR+ AQ+L
Sbjct: 5   FSRTSSTEDIRKSVDKTPEPLPKKPTPTNRAPAQEL 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,349
Number of Sequences: 27780
Number of extensions: 154816
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)