Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_L18
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 206 1e-53
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 204 6e-53
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 204 8e-53
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 29 2.9
04_01_0253 - 3358090-3359052 29 2.9
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.9
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 28 6.7
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.7
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 206 bits (504), Expect = 1e-53
Identities = 97/165 (58%), Positives = 129/165 (78%)
Frame = -3
Query: 562 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 383
LADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 382 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 203
KTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 128 KTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSK 187
Query: 202 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEXSKLMELH 68
IP+ I K+IEKA I+PL++V +RKVK+LK P+F+ KLME+H
Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 97.9 bits (233), Expect = 7e-21
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = -2
Query: 737 GXKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 564
G KG KKK VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 12 GKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVS 69
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 204 bits (498), Expect = 6e-53
Identities = 96/165 (58%), Positives = 128/165 (77%)
Frame = -3
Query: 562 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 383
LADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 382 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 203
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSK 187
Query: 202 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEXSKLMELH 68
IP+ I K+IEKA I+PL++V +RKVK+LK P+F+ KLME+H
Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 98.3 bits (234), Expect = 6e-21
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = -2
Query: 737 GXKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 564
G KG KKK VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 12 GKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVS 69
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 204 bits (497), Expect = 8e-53
Identities = 97/165 (58%), Positives = 127/165 (76%)
Frame = -3
Query: 562 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 383
LADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 382 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 203
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSK 187
Query: 202 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEXSKLMELH 68
IP+ I K+IEK+ I+PL++V IRKVK+LK P+F+ KLME+H
Sbjct: 188 FIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
Score = 98.3 bits (234), Expect = 6e-21
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = -2
Query: 737 GXKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 564
G KG KKK VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 12 GRKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVS 69
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 474 STLRPCTYSAINLNLRKDLSASVSACRSARGNFENSSLQSFRSNFRSLGTVDKRGADLPL 653
++LR +S + RK+ ++CRSAR + + LQS S+ + K AD+
Sbjct: 489 NSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKELKLFADMYK 548
Query: 654 AEHRRSLDIV 683
E S +I+
Sbjct: 549 RESTDSREIM 558
>04_01_0253 - 3358090-3359052
Length = 320
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 43 PLXLHRLRREVPSTSXSRNGASSTLSPFGCKHRAEGRCHGRPSRC 177
PL R RR +TS + +G +T + G R GRP RC
Sbjct: 62 PLRCRRRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 217 EVVNKLIPDSIAKDIEKACHGIYPLRD 137
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 420 LTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFENSS 584
LT+ LS++ + K+ +T+ + L +L+A CRSA + NSS
Sbjct: 389 LTLQAKLSIIHDLLGKVHATVVSTEKGQVYRALLDELNAERRQCRSAMRDLFNSS 443
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 474 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 385
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 567 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 659
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,226
Number of Sequences: 37544
Number of extensions: 459988
Number of successful extensions: 1410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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