Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L18
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   190   1e-48
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81562-4|CAB04556.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       28   7.9  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  190 bits (462), Expect = 1e-48
 Identities = 90/157 (57%), Positives = 116/157 (73%)
 Frame = -3

Query: 538 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 359
           ++E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY L
Sbjct: 74  NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTL 133

Query: 358 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 179
           RVF I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPDSI K
Sbjct: 134 RVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGK 193

Query: 178 DIEKACHGIYPLRDVCIRKVKVLKRPRFEXSKLMELH 68
           DIEK C  +YPL++V IRKVK++KRP+ +  +L +LH
Sbjct: 194 DIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH 230



 Score =  106 bits (255), Expect = 1e-23
 Identities = 48/60 (80%), Positives = 54/60 (90%)
 Frame = -2

Query: 737 GXKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSPG 558
           G KG KKK VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVS G
Sbjct: 11  GKKGGKKKAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLG 70


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 79  STSXSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 219
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>Z81562-4|CAB04556.1|  360|Caenorhabditis elegans Hypothetical
           protein K03D7.7 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +3

Query: 420 LTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFENSSLQSFR 599
           L  H+S   +  MP K+ +T+     +   +NLRK +S S+      +G+  NS    + 
Sbjct: 106 LKSHISKPSLSDMPIKILATISDYLETKDRMNLRK-VSRSLQDFVDYQGSGINSLEICYG 164

Query: 600 SNFRSLGTVDKRGADLPLAEH 662
            N  SL  V KR     L EH
Sbjct: 165 HNSVSLKIVKKRIEYRELEEH 185


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 414 HFLTIHLSLSVVRSMPWK-LQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFEN 578
           H + +  +++V+ +  WK +  T+   T   ++LN   +   S+   +S +GNFEN
Sbjct: 466 HVIEVAPAIAVI-AYTWKNVMHTMEDLTAIGVHLNFEVNRLLSIPLEKSLQGNFEN 520


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 337 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 170
           T + S+S     + QH Q RA++K M E +   V N ++ E   VV K + D    +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 405  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 563
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 405  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 563
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,229,960
Number of Sequences: 27780
Number of extensions: 375630
Number of successful extensions: 1175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)