Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L17
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    30   0.24 
SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual          27   2.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   3.9  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 342 SSELNALSHKWCSTFYGI*APHHEYSYLTLQTINNNKLLDFI--STVQKIVPYTYS 503
           SS  N LSH   + F        +Y Y TLQ+  N  + D I   T+ K++P+ +S
Sbjct: 392 SSVPNHLSHMSITRFEDKTKKSRQYRYFTLQSQLNRLIRDGIPAETISKLLPHVHS 447


>SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 151 DKTDKLQI*CINKEIIFT-VFGTYNNYRSSIYLGPI 47
           + TD   +   +KE+I + ++ T+NN    +YL PI
Sbjct: 44  ETTDAFTLQLASKEVITSSIYNTFNNTNEHMYLQPI 79


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 427 PSKPLIIINYWISYQQYRK*F 489
           PS  L+I N WISY+  +K F
Sbjct: 251 PSGTLVISNGWISYRHLQKAF 271


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 96  TVKIISLLMHYICNLSVLSYFQCDVLSRFGVFCRYKFPNCLLRRHQYHFND 248
           + ++ + L+ ++CN   LSYF+  V+  F      K          + FND
Sbjct: 265 SARMATFLLKFLCNKKGLSYFKA-VIRAFEWLVEQKLSKTRFSAWMHSFND 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,217
Number of Sequences: 5004
Number of extensions: 43219
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)