Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L17
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0137 + 2063881-2063934,2066218-2066448,2066656-2067249,206...    29   3.0  
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    27   9.1  

>09_01_0137 +
           2063881-2063934,2066218-2066448,2066656-2067249,
           2067980-2068639,2068910-2069164
          Length = 597

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 352 LMHYHINGVAHFTASRH---RIMNIAILPSKPLIIINYW 459
           ++ Y I G+A  T  R+    +++IAILP++ ++ + +W
Sbjct: 325 IISYDIEGIAECTQIRYFASLLLDIAILPTEIMLTVRHW 363


>01_01_0571 -
           4233769-4234239,4234340-4234378,4234712-4234839,
           4235329-4235470,4235519-4235905,4236045-4236230,
           4236382-4236659,4236757-4236883,4237270-4237442,
           4237610-4237657,4237734-4237767,4237837-4237965,
           4238865-4238960,4239419-4239485,4240030-4240085,
           4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 111 SLLMHYICNLSVLSYFQCDVLSRFGVFCRYKFPNCLLR 224
           SL+++ +  + VL  F    LS FG  CR   PN LL+
Sbjct: 883 SLVINALSTIDVLRSFAAMALSSFGTTCR---PNILLK 917


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,056,919
Number of Sequences: 37544
Number of extensions: 218524
Number of successful extensions: 280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)