Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L17
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical p...    28   4.7  
U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical p...    28   4.7  

>U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical
           protein C46H11.10b protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 375 CSTFYGI*APHHEYSYLTLQTINNNKLLDFISTV-QKIVPYTYS 503
           CS F GI  PH+++S LT   +  N L D +  + +KI    YS
Sbjct: 185 CSQF-GIYCPHNQWSELTDHLVEANALYDNVVNIKEKIGSARYS 227


>U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical
           protein C46H11.10a protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 375 CSTFYGI*APHHEYSYLTLQTINNNKLLDFISTV-QKIVPYTYS 503
           CS F GI  PH+++S LT   +  N L D +  + +KI    YS
Sbjct: 288 CSQF-GIYCPHNQWSELTDHLVEANALYDNVVNIKEKIGSARYS 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,618
Number of Sequences: 27780
Number of extensions: 227083
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)