Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L14
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   1.7  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    25   6.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.1  

>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 2   GKASKYYIFAQR-MPSHGNPQXNAITKS---PTRNVAALIQVHTITQFTITI 145
           G A  Y  F +R  PSH NPQ    TKS   P      L  V  I++F + I
Sbjct: 21  GGAVFYSDFIKRPAPSHFNPQFTPFTKSLAPPPSRETLLKNVEDISKFDVLI 72


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 433 LMLLHTIVVECLHCSWNS 380
           ++L HT+ +E LH  WN+
Sbjct: 390 IVLCHTVTIEFLHQFWNA 407


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 79  LCYCIXLWITMRRHA 35
           L Y I LW T+R HA
Sbjct: 606 LAYAIGLWFTLRTHA 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,698
Number of Sequences: 5004
Number of extensions: 41967
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)