Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L14
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    28   7.1  
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813...    27   9.4  

>02_02_0574 - 11701359-11701460,11701469-11701570,11701725-11701922,
            11702090-11704052,11705312-11706126
          Length = 1059

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 601  WLIWKPVCFSIPYETSRKLVYRLIV 527
            W  W    +S PY T  K +YR I+
Sbjct: 1028 WAFWTTTGYSFPYSTEEKQLYRGIL 1052


>08_02_0069 -
           11880841-11880936,11881150-11881221,11881263-11881343,
           11881471-11881542,11882549-11882770,11882849-11882941,
           11883509-11883601,11884546-11884632,11884958-11884990,
           11885091-11885185,11886590-11886674,11886778-11886864,
           11887757-11887846,11887929-11888057,11888668-11888757,
           11888849-11888908,11889074-11889311,11889852-11890054
          Length = 641

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 97  CRTNSSTHYYTVYYNNMLVNEQKY 168
           C T     YY  YYN++ +NE  +
Sbjct: 162 CTTRGEGFYYDAYYNDLTLNETHF 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,210
Number of Sequences: 37544
Number of extensions: 203530
Number of successful extensions: 462
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)