Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_L14
(634 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 2.5
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 23 3.3
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 23 3.3
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 23 3.3
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 7.5
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 7.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 7.5
S78458-1|AAB34402.1| 46|Apis mellifera apamin protein. 21 9.9
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 5 KASKYYIFAQRMPSHGNPQXNAITKSPTRNVAALIQVHTITQF 133
+ +KYY+ P H + N IT + + A LI I +F
Sbjct: 81 ETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEF 123
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 5 KASKYYIFAQRMPSHGNPQXNAITKSPTRNVAALI 109
+ SKYY+ P H + N IT + + A LI
Sbjct: 8 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 42
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 5 KASKYYIFAQRMPSHGNPQXNAITKSPTRNVAALI 109
+ SKYY+ P H + N IT + + A LI
Sbjct: 24 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 58
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 5 KASKYYIFAQRMPSHGNPQXNAITKSPTRNVAALI 109
+ SKYY+ P H + N IT + + A LI
Sbjct: 81 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 454 VCTCFVFLMLLHTIVV 407
VC CF++ LL + V
Sbjct: 369 VCMCFIYASLLEFVCV 384
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 454 VCTCFVFLMLLHTIVV 407
VC CF++ LL + V
Sbjct: 338 VCMCFIYASLLEFVCV 353
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 454 VCTCFVFLMLLHTIVV 407
VC CF++ LL + V
Sbjct: 389 VCMCFIYASLLEFVCV 404
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 454 VCTCFVFLMLLHTIVV 407
VC CF++ LL + V
Sbjct: 338 VCMCFIYASLLEFVCV 353
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 457 AVCTCFVFLMLLHTIVV 407
+VCT FVF+ L+ +V
Sbjct: 312 SVCTVFVFMALMEYCLV 328
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 583 VCFSIPYETSRKLVYRLIVSHYCD 512
+CF TS +YRL + +CD
Sbjct: 24 ICFVCKDITSTSALYRLKLYLFCD 47
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 630 FHXKLSFELRGLYGNQFAFRYHMRLH 553
FH + + + YGN+F+ Y + H
Sbjct: 421 FHVQETDKYDAYYGNRFSGEYEIPAH 446
>S78458-1|AAB34402.1| 46|Apis mellifera apamin protein.
Length = 46
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/18 (38%), Positives = 8/18 (44%)
Frame = +1
Query: 67 CNNKVPDTECCRTNSSTH 120
CN K P+T C H
Sbjct: 28 CNCKAPETALCARRCQQH 45
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,056
Number of Sequences: 438
Number of extensions: 3187
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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