Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_L10
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 37 0.004
03_01_0468 - 3612079-3612197,3612679-3612850 28 1.6
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 27 5.0
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 27 5.0
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 26 6.6
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 26 6.6
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 26 6.6
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 26 6.6
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 37.1 bits (82), Expect = 0.004
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 56 SQPPSFTFRFKXXEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHFHDTSK 232
+QPP R + EDV++TD + V D T + EL L L A H H K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663
>03_01_0468 - 3612079-3612197,3612679-3612850
Length = 96
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 56 SQPPSFTFRFKXXEDVSVTDGSFHVSDDLTAGLPNELDLHLSTL 187
++PP + EDV++++ + V D T + ELD HL L
Sbjct: 10 AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 301 SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 122
S RVLI L D PN + +GR+G G+ V + F+ + +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 301 SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 122
S RVLI L D PN + +GR+G G+ V + F+ + +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 316 FSKHASFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKV 167
F+K S+G V +A+ S+L + + +AR VK+ S G V++
Sbjct: 303 FAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRL 352
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 62 PPSFTFRFKXXEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLAL 193
P F R K V ++++S+ L AG+ L +HL L L
Sbjct: 1050 PKGFRSRVKYFSIVDPIQMAYYISEILDAGMQGPLFMHLYILLL 1093
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 125 HVSDDLTAGLPNELDLHLSTLAL 193
HV DD+ A P+++D H L L
Sbjct: 108 HVQDDVAASSPDQMDHHTKDLLL 130
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = -1
Query: 280 IALSSIL----QAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 113
+ LSS++ QAK+DK N+L+ ++L + + + E + ET + ++ K +
Sbjct: 87 LELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD-LKVEKNEL 145
Query: 112 RD 107
RD
Sbjct: 146 RD 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,900,175
Number of Sequences: 37544
Number of extensions: 161107
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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