Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L08
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   2.3  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   2.3  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   2.3  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    28   5.3  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   9.2  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   9.2  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   9.2  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 303 PSRITPFNPFQIPLLNTIIL 244
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 303 PSRITPFNPFQIPLLNTIIL 244
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 303 PSRITPFNPFQIPLLNTIIL 244
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 177 KQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIAT-GFHGIHVIIGTLXLLIC 1
           +Q L L  LLG+       Y  +E  ++  D  Y     + T GF  +H  +GT+  ++C
Sbjct: 292 RQLLVLVFLLGYMTISACVYTILEPMWSFLDSFYFCLVSLLTVGFGDLHP-VGTVEYMLC 350


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 208 LIDRK*LLTNKTKIIFNYFIRILFYYFTSI 119
           LID + LL NKT   F YF    F YFT++
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 297 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 184
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 297 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 184
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 297 RITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFS 184
           R+ PFN  +I   +  +L  +G T T   HS+ + NFS
Sbjct: 9   RVRPFNQREISNTSKCVLQVNGNTTTINGHSINKENFS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,020
Number of Sequences: 27780
Number of extensions: 151662
Number of successful extensions: 345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)