Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L06
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   3.6  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   3.6  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   4.7  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   8.2  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 433 FFKEWSANVLHQKDCFCIVKF 495
           F  +W+ N   +KDC C+ KF
Sbjct: 232 FRDDWTMNTSPEKDCRCVRKF 252


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 325 SGLEALISKPRILIT*LAELANRCSHMIWVERNPYMFF 438
           S LE   S+P IL+T L       S  IW   +P +FF
Sbjct: 39  SALEERASRPSILVTFLVLAGTILSLYIWPILSPDLFF 76


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 556 ASSHSILKDSSSFSPIHCGFGSDAGTLLQVVFEGRLAESPLSFSELSV 699
           A   ++LK+ SSF P + G   +   + Q  F G++++  +S S+  +
Sbjct: 336 AKELAVLKEKSSFFPTNTGNTFETKPVKQDFFYGKVSDKGVSSSKKKI 383


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 698 TDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENEL 585
           T + E +RG S+S+PS+   +      P+P+    ++L
Sbjct: 262 TSDLEQQRGTSSSQPSENDANITALPKPEPKMYENSDL 299


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 494 FSLLKLFFAKTFREQCTSYFLLHHILF*KIQ-VHSHPSTAALDLMPAHCYRLFSKVDLPN 670
           F L +LFF    R+   S  L+ +I F +++  +SH + A++  +     RL +   +P 
Sbjct: 181 FLLFRLFFGVFLRKNSISR-LVGYIFFLRMRYTNSHFTRASIKAVSLRMDRLVADNRVPP 239

Query: 671 LLFHSLNYLXVYTRKF 718
           ++ ++ +    Y  KF
Sbjct: 240 VIKNAWHTFKTYVSKF 255


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = -2

Query: 239 GVELPTSCTEKNSTTEPCEYVDIIMKTDMVGRLPITDIYFKVNLMEKDLKISVENI 72
           G+  P +   +  +     + +I+    +V    + D+Y  +  ME DLK  ++N+
Sbjct: 111 GIGFPITSLREIESLSSIRHDNIVELEKVVVGKDLKDVYLVMEFMEHDLKTLLDNM 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,477
Number of Sequences: 5004
Number of extensions: 67933
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)