Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L06
         (720 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.                   31   4.1  
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran...    31   4.1  
AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter pro...    31   4.1  
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p...    31   4.1  

>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
          Length = 2273

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 312 NRSITDME*CCNWFLSYFKI-AIPLRCGTAYIVHGEKLHY 196
           N+ +++    C WFL  F I ++ +   T +I+HG  LHY
Sbjct: 688 NQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHY 727


>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
           transporter protein.
          Length = 2273

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 312 NRSITDME*CCNWFLSYFKI-AIPLRCGTAYIVHGEKLHY 196
           N+ +++    C WFL  F I ++ +   T +I+HG  LHY
Sbjct: 688 NQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHY 727


>AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter
           protein.
          Length = 2273

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 312 NRSITDME*CCNWFLSYFKI-AIPLRCGTAYIVHGEKLHY 196
           N+ +++    C WFL  F I ++ +   T +I+HG  LHY
Sbjct: 688 NQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHY 727


>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
           protein.
          Length = 2303

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 312 NRSITDME*CCNWFLSYFKI-AIPLRCGTAYIVHGEKLHY 196
           N+ +++    C WFL  F I ++ +   T +I+HG  LHY
Sbjct: 718 NQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHY 757


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,135,859
Number of Sequences: 237096
Number of extensions: 2172257
Number of successful extensions: 4738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4738
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)