Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L06
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.72 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 710 ECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELES 579
           +C+P + +    G++A     ++ S   ASD  P     NE E+
Sbjct: 241 KCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEA 284


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 209 KNSTTEPCEYVDIIMKTDMVGRLPITDIYFKVNLMEKDLKISVENI 72
           K    E C +  + +  D V  +   D+Y     M+ DLK S+  I
Sbjct: 52  KRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIRKI 97


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/75 (20%), Positives = 32/75 (42%)
 Frame = -2

Query: 377 ASQVIRIRGLDIKASSPEIIQSIVQLLTWNDVAIGFYPTSKSLFHYGVELPTSCTEKNST 198
           A Q   +R  + +++   +   ++Q   + DV +     S       +   +S  +K   
Sbjct: 7   AGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLL 66

Query: 197 TEPCEYVDIIMKTDM 153
           + PC++  IIM  D+
Sbjct: 67  SNPCKHPTIIMPQDV 81


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 558 SRKYDVHCSRNVFAKNN-FSKEKF 490
           +RKYDV     +FA N  ++K+ +
Sbjct: 424 ARKYDVQTDSIIFANNQPYTKDSY 447


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 416 NVIHTCSSRNGLQTYSTRKIVFAS*NFSLLKL-FFAKTFREQCTSY 550
           N  HTC ++NG  T     I+ A     L+KL    K++  +C  Y
Sbjct: 20  NSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIY 65


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 295 HGMMLQLVFILLQ 257
           H M LQ +FILLQ
Sbjct: 3   HRMWLQQIFILLQ 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,260
Number of Sequences: 438
Number of extensions: 4785
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)