Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L03
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7SDV0 Cluster: Predicted protein; n=1; Neurospora cras...    34   3.5  
UniRef50_A7D2K1 Cluster: LigA precursor; n=1; Halorubrum lacuspr...    27   4.0  
UniRef50_A4YQB3 Cluster: Putative transcription regulator; n=1; ...    33   8.0  

>UniRef50_Q7SDV0 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 644

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 588 PQREPVMLALYPTPNDDLSVGQALQAEYHGGTAEVIVS-PRGKYLRLT 448
           P+++      +P PND LS G  L +  HG T        RG+Y R++
Sbjct: 298 PRQDRASTVSFPQPNDGLSNGNVLTSNSHGATVRASEGFARGRYRRIS 345


>UniRef50_A7D2K1 Cluster: LigA precursor; n=1; Halorubrum
           lacusprofundi ATCC 49239|Rep: LigA precursor -
           Halorubrum lacusprofundi ATCC 49239
          Length = 473

 Score = 27.5 bits (58), Expect(2) = 4.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 514 GRVPRWHRRGYRVASRKVP 458
           GRVPR  RRG+ VA R+ P
Sbjct: 237 GRVPRTPRRGHAVARRRRP 255



 Score = 25.0 bits (52), Expect(2) = 4.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 643 RVSRCTVCMRQWASQTYSTATRTGDVSFVP--NAQRRPFRGPSPT 515
           R S    C R+  SQT  TA R+G  S V    A+  P  GP  T
Sbjct: 162 RTSDSVGCRRRGGSQTRRTAPRSGPRSAVSVRGARAVPRGGPPRT 206


>UniRef50_A4YQB3 Cluster: Putative transcription regulator; n=1;
           Bradyrhizobium sp. ORS278|Rep: Putative transcription
           regulator - Bradyrhizobium sp. (strain ORS278)
          Length = 311

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 619 MRQWASQTYSTATRTGDVSFVPNAQRRPFRGPSPT 515
           ++Q A Q + +A R GDVS VP      FRG  P+
Sbjct: 74  LQQRAGQRFESACRPGDVSIVPAGHETVFRGRLPS 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,054,829
Number of Sequences: 1657284
Number of extensions: 11350560
Number of successful extensions: 25629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25625
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)