Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_L03
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1447|AAN09260.1| 1506|Drosophila melanogaster CG32681-P...    30   3.2  
U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type ...    29   5.6  
AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA...    29   5.6  

>AE014298-1447|AAN09260.1| 1506|Drosophila melanogaster CG32681-PA
           protein.
          Length = 1506

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 598 TYSTATRTGDVSFVPNAQRRPFRGPSPTGRVPRWHRRGYRVASRK 464
           T  T    G+   + NAQ    +  SP  R   W R G+R  SR+
Sbjct: 160 TTETRGGNGNPFLIGNAQTEEMQSKSPKRRRFHWERHGHRCPSRR 204


>U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type IV
            alpha 2 protein.
          Length = 1761

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 655  DKDSRVSRCTVCMRQWASQTYSTATRTGDVS 563
            D  S++SRCTVC R+  S    TA    D S
Sbjct: 1721 DFTSKISRCTVCRRRGNSFVARTAKSRADAS 1751


>AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA
            protein.
          Length = 1940

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 655  DKDSRVSRCTVCMRQWASQTYSTATRTGDVS 563
            D  S++SRCTVC R+  S    TA    D S
Sbjct: 1723 DFTSKISRCTVCRRRGNSFVARTAKSRADAS 1753


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,763,101
Number of Sequences: 53049
Number of extensions: 501943
Number of successful extensions: 983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)