Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K24
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 99 2e-21
Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical pr... 97 1e-20
AF100669-2|AAK39264.1| 546|Caenorhabditis elegans Hypothetical ... 94 7e-20
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 60 2e-19
Z82282-4|CAB05276.1| 485|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 34 0.076
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 33 0.17
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 33 0.17
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 33 0.23
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 0.53
AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical ... 29 2.1
AC024744-2|AAK72068.1| 327|Caenorhabditis elegans Hypothetical ... 29 2.1
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 29 2.8
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 29 2.8
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 29 3.8
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 29 3.8
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 5.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 5.0
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid tr... 28 5.0
AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical ... 28 5.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 6.6
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/137 (37%), Positives = 78/137 (56%)
Frame = -3
Query: 595 GTNTFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFG 416
G T+ EN+ + VTKV SR +Q A ++L GV+ K A +IP+P++GGL +
Sbjct: 336 GVTTYAENIAIMSVTKVTSRITMQMAGVFLILAGVISKFAAFLSMIPEPIIGGLLAMGVC 395
Query: 415 MISAFGLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVIHTGLEALDAVLQVLL 236
+I+ LS LQ VD+ SRNL IIG S+ L + ++TG + +D V LL
Sbjct: 396 LINGVSLSNLQTVDMKLSRNLTIIGVSIIMGLTVATHF--EKTPLNTGNQIVDDVFGTLL 453
Query: 235 STSILVGGAVGCLLDNV 185
+ +L+GG + +LDN+
Sbjct: 454 TIRMLIGGVIAFVLDNI 470
>Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical
protein C51E3.6 protein.
Length = 555
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/136 (36%), Positives = 75/136 (55%)
Frame = -3
Query: 595 GTNTFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFG 416
G T EN+G IGVT+V SR + A +++ G++ K+GA+ IP P+VGG+
Sbjct: 355 GMTTHTENIGVIGVTRVASRWTMVMAGVFLIILGLITKIGALLSTIPDPLVGGVLASSMA 414
Query: 415 MISAFGLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVIHTGLEALDAVLQVLL 236
M+ +S LQ VD+ SRN+ I GFS+ F L++ ++ + T + +L VLL
Sbjct: 415 MVVGVAVSNLQTVDMTLSRNMGIFGFSMMFGLIVPKYFKLFP--VDTDWGWFNQILNVLL 472
Query: 235 STSILVGGAVGCLLDN 188
+ VG C+LDN
Sbjct: 473 QMPMFVGALCACILDN 488
>AF100669-2|AAK39264.1| 546|Caenorhabditis elegans Hypothetical
protein R11E3.2 protein.
Length = 546
Score = 94.3 bits (224), Expect = 7e-20
Identities = 49/139 (35%), Positives = 77/139 (55%)
Frame = -3
Query: 595 GTNTFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFG 416
G T+ EN+ + VTKV SR +Q A +++ G+ K AV +IP+PVVGG+ +
Sbjct: 341 GITTYAENIAIMSVTKVASRITMQTAGIFLLIAGIFSKFAAVLAMIPEPVVGGVLAIGIC 400
Query: 415 MISAFGLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVIHTGLEALDAVLQVLL 236
M++ L L VDL SRNL I+G ++ L + + + + TG + +D V LL
Sbjct: 401 MVNGVVLRNLMTVDLRLSRNLTIMGIAVIMGLTVA--LHFENNPLKTGNQTVDNVFGTLL 458
Query: 235 STSILVGGAVGCLLDNVXP 179
+ +L+GG + LDN+ P
Sbjct: 459 TIRMLIGGIIAFTLDNIAP 477
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 60.1 bits (139), Expect(2) = 2e-19
Identities = 27/72 (37%), Positives = 41/72 (56%)
Frame = -3
Query: 598 NGTNTFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMF 419
+G T+ EN+ I +TKV SR +QFA ++++ G+ K A+ IP +VGGL +
Sbjct: 372 SGVTTYAENIALIHITKVASRATMQFAGFILIMLGLFSKFAAILASIPDALVGGLLTMGI 431
Query: 418 GMISAFGLSALQ 383
MI +S LQ
Sbjct: 432 SMIGGVAMSNLQ 443
Score = 52.8 bits (121), Expect(2) = 2e-19
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = -3
Query: 388 LQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVIHTGLEALDAVLQVLLSTSILVGGA 209
L+ +DLN RNL I+G SL L++ H ++TG +D +L +LL+ +LVGG
Sbjct: 474 LKMIDLNLCRNLSIMGLSLLLGLIVPLHFEKHP--VNTGHFEIDHILNMLLNIKMLVGGV 531
Query: 208 VGCLLDNVXP 179
V LDN P
Sbjct: 532 VATFLDNTVP 541
>Z82282-4|CAB05276.1| 485|Caenorhabditis elegans Hypothetical
protein T07G12.4 protein.
Length = 485
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/135 (34%), Positives = 69/135 (51%)
Frame = -3
Query: 595 GTNTFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFG 416
G T+ EN+ + VTKV SR +Q A +++L G+ K A +IP+ ++GG+
Sbjct: 278 GVTTYSENIAIMQVTKVTSRITMQCAGVILILMGIFSKFAAFLAMIPEAIIGGVLTAGMS 337
Query: 415 MISAFGLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVIHTGLEALDAVLQVLL 236
MI S LQ VDL SRNL IIG S+ + +H+G + +D + LL
Sbjct: 338 MICGVAFSNLQSVDLRLSRNLTIIGLSIILGCTIPAHF--EKSPLHSGNKTIDDIFGTLL 395
Query: 235 STSILVGGAVGCLLD 191
+LVGG + LD
Sbjct: 396 KMRMLVGGLIAFCLD 410
>Z82282-2|CAB05274.2| 544|Caenorhabditis elegans Hypothetical
protein T07G12.2 protein.
Length = 544
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/135 (34%), Positives = 69/135 (51%)
Frame = -3
Query: 595 GTNTFGENVGAIGVTKVGSRRVVQFAAGLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFG 416
G T+ EN+ + VTKV SR +Q A +++L G+ K A +IP+ ++GG+
Sbjct: 340 GVTTYSENIAIMQVTKVTSRITMQCAGVILILMGIFSKFAAFLAMIPEAIIGGVLTAGMS 399
Query: 415 MISAFGLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVIHTGLEALDAVLQVLL 236
MI S LQ VDL SRNL IIG S+ + +H+G + +D + LL
Sbjct: 400 MICGVAFSNLQSVDLRLSRNLTIIGLSIILGCTIPAHF--EKSPLHSGNKTIDDIFGTLL 457
Query: 235 STSILVGGAVGCLLD 191
+LVGG + LD
Sbjct: 458 KMRMLVGGLIAFCLD 472
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = +3
Query: 417 PNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSPKVL 590
P T PTT T + PTT ST TT PT T P +P +
Sbjct: 79 PTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTTTTMPPCNPNAV 136
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 400 GLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVI 281
GL ALQY++++ SRNL I + F L W++ S +
Sbjct: 282 GLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSISSSAL 321
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 400 GLSALQYVDLNSSRNLYIIGFSLFFPLVLTRWMAAHSGVI 281
GL ALQY++++ SRNL I + F L W++ S +
Sbjct: 282 GLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSISSSAL 321
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +3
Query: 426 TQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCT----TRRDPTLVTPMAPTFSPK 584
T RP TT T + P T +T P T TRR P VTP PT P+
Sbjct: 365 TTTRPQTTKTTTTPQTTTTRPQTTKTTTTPQTTTTRLQTTRRPPIRVTPRLPTVIPE 421
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.5 bits (68), Expect = 0.53
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +2
Query: 236 QQHLEHGVQRLQPRVYDATVSRHPPGQDQREEQAKP-YDVQVPR-AVQVHVLKC*ETEGR 409
QQH + Q+L R + H + R P Y + R V+ H+ + + G
Sbjct: 187 QQHHQQQQQQLAFRPRHRSSHHHQEPRRHRAPSPDPDYSPPLSRNKVRFHIPEEPVSRGD 246
Query: 410 YHSEHNAEEAADYGLRDDDEHGSQLAHDPLQHHEA 514
Y S + D+G DDD + DP H ++
Sbjct: 247 YVSSRHVFNTDDFGDEDDDYESVSMNPDPAPHSDS 281
>AL117200-6|CAB55058.1| 209|Caenorhabditis elegans Hypothetical
protein Y50E8A.10 protein.
Length = 209
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 438 PPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAP 569
PP T + TA S+P P ++++P + P+ P P
Sbjct: 136 PPVTAKSALSKTAKSVPNAPNTSVKPTSLAANSPAPSYTNPGTP 179
>AC024744-2|AAK72068.1| 327|Caenorhabditis elegans Hypothetical
protein Y108G3AL.2 protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 514 GLMVLQGVVGKLGAVFIIIPQPVVGGLFCVMFGMISAFGLSALQYVD-LNSSRNLYIIGF 338
G LQG+ G G V + VV +C+++ + + +S Q + LNS +++YI G
Sbjct: 110 GTRRLQGMTGMCGGVRGVGAGGVVSSAYCLLYRLFN-LKISRKQLISMLNSRQSVYIRGL 168
Query: 337 SLFF 326
+
Sbjct: 169 GFMY 172
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 425 NAEEAADYG--LRDDDEHGSQLAHDPLQHHE 511
N ++ A YG DDDE GS ++ P Q HE
Sbjct: 2 NRKKLAAYGQEFEDDDEEGSSVSKKPTQIHE 32
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 438 PPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 572
PPT G G +T S PT +T+ P N + +PT T PT
Sbjct: 1354 PPTEGSGE--STTSSAPTVEPATVLPPQNRNEKPEPTKDTFALPT 1396
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 426 TQKRPPTTGCGMMMN-TAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 572
T K PTT M T P+ PTT ST TT + T TP PT
Sbjct: 281 TMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKS-TPTTPTTPT 329
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +3
Query: 426 TQKRPPTTGCGMMMNTAPSLPTT----PCSTMRPAANCTTRRDPTLVTP 560
T +P TT T LPTT P +T TT +PT TP
Sbjct: 207 TTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTP 255
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +3
Query: 426 TQKRPPTTGCGMMMNTAPSLPTT----PCSTMRPAANCTTRRDPTLVTP 560
T +P TT T LPTT P +T TT +PT TP
Sbjct: 203 TTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTP 251
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +3
Query: 426 TQKRPPTTGCGMMMNTAPSLPTT----PCSTMRPAANCTTRRDPTLVTP 560
T +P TT T LPTT P +T TT +PT TP
Sbjct: 146 TTAQPTTTTTATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTP 194
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +3
Query: 423 ITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSP 581
+T PTT T TTP +T P TT T ++ T P
Sbjct: 295 VTSTTEPTTSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTTKPP 347
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 414 IPNITQKRPPTTGCGMMMNT---APSLPTTPCSTMRPAANCTTRRDPTLVTPMAPTFSP 581
IP+ +Q P+T G M+T S T+P + A ++ T +T ++P+ SP
Sbjct: 969 IPSTSQNTNPSTSSGSSMSTQTPQSSQSTSPVESSTSGATSSSGSPGTTLTSISPSPSP 1027
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 414 IPNITQKRPPTTGCGMMMNTAPSLPT-TPCSTMRPAANCTTRRDPTLVTPMAPT 572
+ ++ PPTT T P+ PT P +T P AN TT PT V M P+
Sbjct: 472 VTTVSTMSPPTTV------TVPTTPTPVPTTTNTPPANPTTAT-PTTVGTMTPS 518
>AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid
transporter protein 7 protein.
Length = 506
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -3
Query: 451 PVVGGLFCVMFGMISAFGLSALQYVDLNSSRNLY-IIGFSLFFPLVLTRWMAAHSGVIHT 275
P V + + FG GL + +D N Y ++GFS+ +PL+L + + +
Sbjct: 106 PAVLAIQAISFGEYIVTGLDSWITIDENWRFMTYRLVGFSMLWPLMLLNFFSLKK--VAG 163
Query: 274 GLEALDAVLQVLLSTSILVGG 212
+ + +++++++ I++ G
Sbjct: 164 AFQIVATAIKLIVASIIIITG 184
>AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical
protein Y41D4A.5 protein.
Length = 456
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 393 ERPKADIIPNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPA 518
E PK D+ P + P G + AP PTT ST + A
Sbjct: 363 EEPKLDLAPPVATADLPVGSSGSVRLIAPPTPTTGPSTDQTA 404
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Frame = +2
Query: 413 HSEHNAEEAADYGLRDDDE----HGSQLAHDPLQH 505
H EH A A +G DD E HG H QH
Sbjct: 692 HHEHGAHHGAHHGHHDDKENHHHHGHHSKHSKKQH 726
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 328 FPLVLTRWMAAHSGVIHTGLEALDAVLQVLLSTSILVGG 212
F LV+ + + G + GL+ LDA+ L+S +I V G
Sbjct: 242 FTLVVNLYACIYDGSKYLGLDRLDAIEAFLISVAIGVTG 280
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 399 PKADII-PNITQKRPPTTGCGMMMNTAPSLPTTPCSTMRPAANCTTRRDPTLVTPMAPT 572
P II P + TT T + PTTP +T TT T TP T
Sbjct: 48 PNTSIISPKWVKADCTTTSTTTTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTT 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,619
Number of Sequences: 27780
Number of extensions: 257030
Number of successful extensions: 1056
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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