Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K22
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0398 + 24933894-24933916,24934015-24934555 32 0.44
06_02_0303 + 14022428-14022652,14023247-14024159,14024310-140247... 30 2.4
12_02_0056 + 12955832-12956410,12957398-12957499 29 3.1
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 29 3.1
07_01_1085 + 9890369-9892114,9892213-9892731 28 9.5
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 28 9.5
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 28 9.5
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 9.5
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 28 9.5
>04_04_0398 + 24933894-24933916,24934015-24934555
Length = 187
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -3
Query: 451 PKKKWMDCVKDDMGRRGVSEE-MVYDRRVWKE 359
PKKK+ CV+D+ G + ++E+ MV +W+E
Sbjct: 19 PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50
>06_02_0303 +
14022428-14022652,14023247-14024159,14024310-14024700,
14024949-14025206,14025284-14025394,14025486-14025564,
14025842-14026027
Length = 720
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = -3
Query: 586 KVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERGRPKKKWMDCVKDDMGR 407
++ P L A L V++ E EVV+ VE +E+ PKKK++ VK GR
Sbjct: 388 QLEPEQPMLDKAELEREEEVVQEREKEVVQEREEEAVEEHKEKSAPKKKFV--VKAFPGR 445
Query: 406 ----RGVSEEMVYDRR 371
+G +++ VYD+R
Sbjct: 446 KRDIKGKAKD-VYDKR 460
>12_02_0056 + 12955832-12956410,12957398-12957499
Length = 226
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 387 WYMIEEYGRRKHVAPTPGDW 328
W ++ + GRR+HV P G+W
Sbjct: 25 WIVVLQKGRRRHVVPAFGEW 44
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = -3
Query: 577 PVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERGRPKKKWMDCVKDDMGR--- 407
P L A L V++ E EVV+ VE +E+ PKKK++ VK GR
Sbjct: 552 PEQPMLDKAELEREEEVVQEREKEVVQEREEEAVEEHKEKSAPKKKFV--VKAFPGRKRD 609
Query: 406 -RGVSEEMVYDRR 371
+G +++ VYD+R
Sbjct: 610 IKGKAKD-VYDKR 621
>07_01_1085 + 9890369-9892114,9892213-9892731
Length = 754
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 543 PKRALLSFSVTGATFRLPLTYSFRILSI 626
P A+LSFSVT TFRL + F++ +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282
>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
Length = 722
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 543 PKRALLSFSVTGATFRLPLTYSFRILSI 626
P A+LSFSVT TFRL + F++ +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 426 TQSIHFFLGLPLSLNLSTFIVNTLL 500
T +FF GL L L+ ST+IV T++
Sbjct: 696 TPEDNFFFGLMLQLSASTYIVGTII 720
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 572 HRCHFQTSSNVFIPYSIHS--RYSTHPSQHSHLCC 670
H CH S+ P ++HS ++ H +H H+ C
Sbjct: 849 HACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHC 883
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 509 IFIPSHHMSIPSQTCTPQLLCHRCHFQTSSNVFIPYSIHSRYSTHPSQHSHLCCM 673
I++P + + S + + RC + SS V P S+ S+ +HS L CM
Sbjct: 182 IWVPPIYRRLLSVDKAERDMAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCM 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,703
Number of Sequences: 37544
Number of extensions: 366651
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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