Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K22
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    40   0.003
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    40   0.003
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    40   0.003
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    39   0.005
Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
 Frame = -3

Query: 706  WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPVTEKLRSARLGW 539
            WT   A   R+      + R + G+T    R   +  E +R    V      ++  +LGW
Sbjct: 755  WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 814

Query: 538  YGHVMRRNENEVVKRVLTMNVERF-RERGRPKKKWMDCVKDDMGRRGVSEEMV 383
             GHV RR +      +       + R  GRP  +W D ++ ++  R    E++
Sbjct: 815  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 867


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
 Frame = -3

Query: 706  WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPVTEKLRSARLGW 539
            WT   A   R+      + R + G+T    R   +  E +R    V      ++  +LGW
Sbjct: 930  WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 989

Query: 538  YGHVMRRNENEVVKRVLTMNVERF-RERGRPKKKWMDCVKDDMGRRGVSEEMV 383
             GHV RR +      +       + R  GRP  +W D ++ ++  R    E++
Sbjct: 990  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 1042


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
            protein K10F12.5 protein.
          Length = 805

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
 Frame = -3

Query: 706  WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPVTEKLRSARLGW 539
            WT   A   R+      + R + G+T    R   +  E +R    V      ++  +LGW
Sbjct: 669  WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 728

Query: 538  YGHVMRRNENEVVKRVLTMNVERF-RERGRPKKKWMDCVKDDMGRRGVSEEMV 383
             GHV RR +      +       + R  GRP  +W D ++ ++  R    E++
Sbjct: 729  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 781


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
 Frame = -3

Query: 706 WTTKVADERRLHAAEMRMLRWMCGVTRMDRIRNEYVRGSL-KVAPVTEKL---RSARLGW 539
           WT   A   R+      + R + G+T   +   +  R  + K++ V + L   +  +LGW
Sbjct: 281 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGW 340

Query: 538 YGHVMRRNENEVVKRVLTMNVERF-RERGRPKKKWMDCVKDDMGRRGVSEEMV 383
            GHV RR +      +       + R  GRP  +W D ++ ++  R    E++
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 393


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
 Frame = -3

Query: 706 WT-TKVADER-RL-HAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVTEKLRSARLGW 539
           WT TK   ER R+ HAA  R L  +    + +R I  E VR   K+      ++  +LGW
Sbjct: 66  WTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGW 125

Query: 538 YGHVMRRNENEVVKRVLT-MNVERFRERGRPKKKWMDCVKDDMGRRGVSEEM-------V 383
            GHV RR +      +      +  R  GRP  +W D ++ ++  R    ++        
Sbjct: 126 AGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQA 185

Query: 382 YDRRVWK 362
            DR+ WK
Sbjct: 186 KDRKAWK 192


>Z75955-7|CAB00121.1|  550|Caenorhabditis elegans Hypothetical
           protein R07B7.12 protein.
          Length = 550

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 253 ILFENFKH*YNVSTSQHHHHYPALLPVTWGRRNMFSPSI 369
           IL  NF H Y+   S H + YP+   + +G+R++F   I
Sbjct: 313 ILVPNFSHNYHQEFSSHFNAYPSYHSIFYGKRDVFVEKI 351


>Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical
           protein F58G1.6 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +1

Query: 523 SSHVHTIPNVHSSASLSQVPLSDFL*RIHSVFYPFSLLHTSIATFASLLHAIAFHPP 693
           S+  + +P    S ++   P S F  +   VF P  +L T    FA   H    H P
Sbjct: 337 STTYYCVPPSEMSFTVDPPPYSTFGAKTDPVFIPIHMLKTPYRPFAPAYHMFRNHGP 393


>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 11  LVNFIHTHFNHISCFKSYS--IHLQFTFFVNVHKNTFLNIKCLCVVKFNS 154
           +V+FIH      + +  Y   IH+ F   + +  +T LNI  +C ++ NS
Sbjct: 205 IVHFIHPKTRAANKYARYVVYIHMIFVVIIPMFLSTSLNILLVCALRKNS 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,232
Number of Sequences: 27780
Number of extensions: 355008
Number of successful extensions: 1044
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)