Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K20
(683 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 30 0.018
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.29
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.29
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.51
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.51
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 1.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 4.7
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 4.7
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 6.3
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 21 8.3
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 8.3
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 30.3 bits (65), Expect = 0.018
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 114 PSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 7
P+ DI + I+ K LFYT N I+ TVL +FL + V
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLV 254
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.29
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 108 HVDIPYNILDTDKPLFYTNNII 43
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.29
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 108 HVDIPYNILDTDKPLFYTNNII 43
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.4 bits (53), Expect = 0.51
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 108 HVDIPYNILDTDKPLFYTNNII 43
++DI +NI K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.51
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 126 PARAPSHVDIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 7
P + DI +NI K LFYT N II V FL + V
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLV 270
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.2 bits (50), Expect = 1.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 102 DIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 7
DI +NI K LFYT N II V +FL + V
Sbjct: 225 DIVFNITLRRKTLFYTVNLIIPCVGISFLSVLV 257
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 102 DIPYNILDTDKPLFYT-NNIISTVLYNFLPLTV 7
DI Y I +P+FY N I+ +L N + L V
Sbjct: 202 DITYEIRLRRRPMFYVFNLILPCILINSVALLV 234
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 3.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 102 DIPYNILDTDKPLFYTNNII 43
DI +NI K LFYT N+I
Sbjct: 224 DIFFNITLRRKTLFYTVNLI 243
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = -1
Query: 317 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 216
+PY + KV A L + + +P ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 4.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = -1
Query: 317 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 216
+PY + KV A L + + +P ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 300 PEEGHGVEDITTRHIFSYKILS 235
P EG + D RHI IL+
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 21.4 bits (43), Expect = 8.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +2
Query: 446 SCHTASDIPGNLHTLPGLCLSLLG 517
S T ++ LHT+ +C+ +G
Sbjct: 15 SAMTLDELKSGLHTVQSVCMKEIG 38
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.4 bits (43), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 571 QRRRARSCSHSKSSFPSTAKQRKTKTRER 485
+R+R S ++S S A KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,783
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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