Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K16
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47... 27 4.2
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 27 5.6
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609... 26 7.4
07_01_0088 + 684471-685154,685271-685834,685938-686222 26 7.4
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 26 7.4
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 26 9.8
06_03_0752 - 24171847-24174321 26 9.8
02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353 26 9.8
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696... 26 9.8
>03_01_0057 +
476172-476283,476337-476449,476532-476634,477089-477210,
477303-477497,477627-477701,478082-478179,478328-478421
Length = 303
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 183 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQN 73
TM W++FI F + + C+ + +K + H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 26.6 bits (56), Expect = 5.6
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 210 PSPALCPAGTMNPWRLFINLFRMKLKNSCY----ARSLKPTPPKR 88
P+ A+ A P+RLF R K S AR LKP+PP R
Sbjct: 3 PAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR 47
>07_01_1104 -
10160493-10160599,10160632-10160637,10160930-10160975,
10161053-10161190,10161275-10161679,10163193-10163330,
10163401-10163482,10163596-10163943,10164294-10164655,
10165154-10165209,10166428-10166558,10166564-10166628,
10169191-10169631
Length = 774
Score = 26.2 bits (55), Expect = 7.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 158 INRRQGFIVPAGHSAGDGSPFSTPAGCESELGFGHYEASQNKE*NREFVHFWL 316
+N G++ P +SAGD TP ++ G ASQ+ N + FWL
Sbjct: 167 LNLDYGYVYPMFYSAGDLLATGTPKVHVNQKNTGSVNASQDIL-NLDETGFWL 218
>07_01_0088 + 684471-685154,685271-685834,685938-686222
Length = 510
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 220 KRAAIAGTVSCRNDESLASIYKLIQNEAEKLLLCQK 113
KR I T+S R+D+ + + + ++++ + LC K
Sbjct: 435 KREMIVSTISRRDDDDMETFRDRVDDDSDHVRLCLK 470
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 303 TNSRFYSLFWLAS*WPKPNSLSHP 232
T+SR LFW AS W K HP
Sbjct: 846 TSSRSSDLFWAASSWLKQLRAYHP 869
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = -1
Query: 348 NSAGRYSKN*LSQKCTNSRFYSLFWLAS*WPKPNSLSHPAGVEKGLPSPALCPAGTMNPW 169
++A +SK S NS L W S + +PN K +CP ++ +
Sbjct: 468 STADTWSKE--SDAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEF 525
Query: 168 RLFINLF 148
+F++++
Sbjct: 526 AMFLSIY 532
>06_03_0752 - 24171847-24174321
Length = 824
Score = 25.8 bits (54), Expect = 9.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 222 PPQLDVKVSWASAI 263
PP +D K+SWA A+
Sbjct: 691 PPHMDTKMSWAEAV 704
>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
Length = 135
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 281 CFGLLHNGRSPTHFHIQLGWK 219
CF L SPT+ H QL WK
Sbjct: 57 CFQPLKIPASPTNIHYQLRWK 77
>01_06_0357 -
28668894-28669238,28669510-28669537,28669578-28669635,
28669836-28669916,28670395-28670526,28670609-28670926,
28672495-28673317
Length = 594
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 146 LNKFINRRQGFIVPAGHSAGDG 211
L+K R GFIVP GH +G
Sbjct: 244 LHKKNGIRNGFIVPIGHGGSEG 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,131,625
Number of Sequences: 37544
Number of extensions: 212870
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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