Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   7.2  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   9.5  

>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 458 VRTXYSKRRRWCCCVTCYLKNEILDVMLPYTPS 360
           ++T YS +  +   VT Y +NE+   M PYT S
Sbjct: 220 IKTWYSDKN-FTLYVTDYTENELFFPMSPYTSS 251


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 339 LCXMATFRWRIWQHYI*NLI 398
           LC   T+R+  W+H + NLI
Sbjct: 34  LCNSLTYRFEGWRHLVENLI 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,931
Number of Sequences: 5004
Number of extensions: 37498
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)