Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K14
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    43   4e-05
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    42   7e-05
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    39   6e-04
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.5  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 24/38 (63%), Positives = 26/38 (68%)
 Frame = -3

Query: 709 GGXRKIICPPGMAYGAKGSPPVIPPNSTLVFEVELKNV 596
           GG RKI  P  MAYG + S P IP NSTLVFEV+L  V
Sbjct: 324 GGERKITIPAPMAYGNQ-SIPGIPKNSTLVFEVKLVRV 360


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = -3

Query: 712 VGGXRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 605
           +G   K+   P   YG +G P +IPPNSTL+F+VEL
Sbjct: 69  LGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVEL 104


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 21/36 (58%), Positives = 24/36 (66%)
 Frame = -3

Query: 712 VGGXRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 605
           VGG R I  P  MAYG+K  P  IP NS LVF+V+L
Sbjct: 324 VGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 53   NTSRNVLQHNVVXVVSSFKLRTLSTLHKFGNTXYENL 163
            NT +++L+  ++ V+S  +LR L   H F     ENL
Sbjct: 1918 NTKQSLLRSAILCVISLQRLRLLGQRHSFCEEVIENL 1954


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 430 SFDGQYYLFVI*RLLRRTVIIT*LVLMLNSH 338
           SFDGQ+ L++  +L+  T+++     ++NSH
Sbjct: 281 SFDGQFSLYIAHQLILETIVVE----VMNSH 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,853
Number of Sequences: 5004
Number of extensions: 53672
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)