Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K13
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 29 0.44
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.3
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 1.3
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 27 2.3
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 26 3.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 4.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 4.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 4.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 4.1
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 25 7.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.2
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 9.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 9.5
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 0.44
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -3
Query: 497 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPI 348
YT P L CD+G+K T I F +IL ++ + I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 529 IYQNLNMVRPSTHYPTFYFATEERKRI 449
I+ L +V+PS +P FY +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 395 WFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKI 270
W T K +HV+ + +PV AL+ + +Y+RT + I
Sbjct: 892 WLTTLKKPQSIHVSGRFPQVSSPVNTALSNSLLYIRTLSRVI 933
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 87 KFIL*K*TILYYTSHDNQLWSFFQNFKHFCSIFRLTEYNI 206
KF L + IL +SHD+QL+S SI R ++ +I
Sbjct: 195 KFALQRKRILLISSHDDQLYSIIDMIVRLSSIKRSSDASI 234
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 275 KIVSLATKGTRYEVVNELFTS-HQNIIFGQPENAAKMFKIL 156
+I +A +G ++ ++ L H NII+G PE K I+
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNII 99
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 373 IILDVLNHSKHSLAKILSKGLSISVLFFFSPLSQ----SKKSGNVYLGGPYLGFDRS 531
+I +L + S K+ K + VL L + +K SGN+YLGG + G R+
Sbjct: 3 LICSILPKKEPSYLKLWRKQVIYQVLTDRFALDEDNFYAKASGNLYLGGTWKGITRN 59
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -3
Query: 275 KIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQLVVMAGV 120
K++S KGTR+EV + + T I++ + A + K + +A L+++ V
Sbjct: 283 KVLSATWKGTRFEVQSVIRTVSDKILY---DKAVPLEKRINRANALLMIGQV 331
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 384 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 473
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 384 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 473
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 384 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 473
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 384 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 473
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 446 TEIDNPFERILARECLEWFNTSKMIVFLHVNPITME 339
T + +PF ++E E S++I VNP+T+E
Sbjct: 109 TLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 144
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 218 TSHQNIIFGQPENAAKMFKILK 153
T NI+FG+P + + F+I+K
Sbjct: 660 TIRSNILFGEPYDEERYFQIIK 681
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 379 LDVLNHSKHSLAKILSKGLSISVLFFFSPLSQSKKS 486
+D LN+ HS AKIL + L F+ + KKS
Sbjct: 131 IDHLNNFLHSSAKILDRALCDQSNQLFTDYTVKKKS 166
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 457 KRIKQKLTIPSKGFWPENVWNGLI 386
K+++ + I K F PEN NG I
Sbjct: 611 KKVQLRTKIKKKFFMPENALNGFI 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,640
Number of Sequences: 5004
Number of extensions: 51475
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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